Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00442 ATGGCGGGTGGGAGGGTCTATGGCGGTGCTCCTAGTAACACTTCCAATTTGAGTATTTTGCTTCAGAATCAAACCCCTTCTTGTGCTTCTGAGCCACTCGATACCCTTTTCCTTTCTGggtcttcttctcctttcctcGGTACAAGATCTATGATGAGCTTTGAAGATATTCAACGAGGAAAGGGGTGTAATAGGTCGCTTTTCCGGCCTTTTGATCATGATGACAATGGAGACGATGGCATGGACGAGTACTTTCATCAACCTGAAAAGAAGAGGCGGCTCGCTGCTGACCAAGTGCACTTTCTTGAGAAAAGCTTCGAGGTGGAGAACAAGCTTGAACCGGAAAGGAAAATTCAACTAGCTAAAGAGCTTGGTTTACAGCCTCGACAAGTTGCAATCTGGTTTCAGAATCGCAGGGCACGTTGGAAGACCAAACAGATGGAGAAAGATTTTGATTCTCTTCAAGCTAGCTATGATAGCCTTAAGGCAGACTATGAGAGCCTCCtcaaggagaaagagaaactaAAATCTAAGGTTGCAAACCTCACAGAAAAGGGGCTTATCAGAGAGAAACAAGGGGGGAACTTTGAACAAGCTGAAACAAACAGATTGCAGGAACCACAGCAAAAGCCTTTATCCGATTCAGCTGCTTCTGAGGGAGAAGGATCGAAGGCAGCAATTGAGGCATGTAAACAGGAAGAAATAAGTTCAGCCAAGAGTGACATATTCGATTCAGATAGCCCACATTACACAGATGGAGTTCACTCTGCATTGCTGGAGCCTGGTGACTCTTCATATGTTTTTGAACCTGATCAATCTGATCTATCTCAAGATGAAGAAGACAACTTGAGCAACGCCCTATTGCCTCCCTACATGTTCCCCAAACTTGAAGATGTTAATTACTCCGACCCGCCTGAAAGTTCATGCAGTTTTGGATTTCCAGTGGAAGATCAAGCCTTTTGGTCATGGTCTTACTG 977 0.4309 MAGGRVYGGAPSNTSNLSILLQNQTPSCASEPLDTLFLSGSSSPFLGTRSMMSFEDIQRGKGCNRSLFRPFDHDDNGDDGMDEYFHQPEKKRRLAADQVHFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARWKTKQMEKDFDSLQASYDSLKADYESLLKEKEKLKSKVANLTEKGLIREKQGGNFEQAETNRLQEPQQKPLSDSAASEGEGSKAAIEACKQEEISSAKSDIFDSDSPHYTDGVHSALLEPGDSSYVFEPDQSDLSQDEEDNLSNALLPPYMFPKLEDVNYSDPPESSCSFGFPVEDQAFWSWSY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00442 325 Gene3D - 84 153 - -
Bva05g00442 325 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Bva05g00442 325 Coils Coil 144 185 - -
Bva05g00442 325 MobiDBLite consensus disorder prediction 234 248 - -
Bva05g00442 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 325 IPR045224 GO:0003700
Bva05g00442 325 SMART HOX_1 88 149 IPR001356 GO:0003677
Bva05g00442 325 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 325 - -
Bva05g00442 325 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Bva05g00442 325 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Bva05g00442 325 MobiDBLite consensus disorder prediction 190 287 - -
Bva05g00442 325 SUPERFAMILY Homeodomain-like 74 147 IPR009057 -
Bva05g00442 325 MobiDBLite consensus disorder prediction 195 216 - -
Bva05g00442 325 CDD homeodomain 90 146 IPR001356 GO:0003677
Bva05g00442 325 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Bva05g00442 325 Pfam Homeobox associated leucine zipper 145 185 IPR003106 GO:0006355|GO:0043565
Bva05g00442 325 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00442 Bva-Chr5 2192563 2194400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00442 34 323 Homeobox Transcription Factor Family AT3G01470 38.851 8.32e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva05g00442 Homeodomain 2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01263 06 9655852 9658041 Bva05g00442 05 2192563 2194400 ECH
Bva05g00442 05 2192563 2194400 Bva05g00442 05 2192563 2194400 ECH