Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00437 ATGGATTACTATAATATACTGAAAGTAAACAGAAATGCGAGTGACGACGATTTGAAGAAAGCATACAAGAGGCTCGCAATGATATGGCATCCCGACAGGAACCGAGTCAACAAAAGTGAAGCTGAAGCCAAATTCAAGCAAATTTCCGAAGCTTATGACGTTTTGAGTGATCCCCAGAAGCGTCAGATCTATGATCTCTACGGCGAGGAGGCCCTCAAGTCTGGTCAGTTCCCGCCATCTACTTCTTCGTCATCGTCTTCTCGTGCTTACCAGCATTTCCCACACCACCACCGCCAGCACCCCACATCGTTTCGTTTCAATCCCCGGGACGCCGACGACATTTACGCCGAGTTTTTTGGGTCAGACAGTACGAGTGGTGGCGGCGGTAGCAGTGCGAGAAATGGAGGGCATAGAGATAGGTTCTTTAGGACATCTAATGGTTCGGCCTTTGGAGCATCCGGGAGGAAGGCGCCGGCTGCGGAGATTGTTTTGCCCTGTAGCTTAGAAGAGCTTTACAAAGGTGTTaacaaaaagatgaaaatttcaagGAATGTCTATGACGCTTTTGGTAAGTTGTTGAATGTGGAGGAGATATTGACTATCGAGATAAAGCCTGGTTGGAAGAAAGGAACAAAGATTACTTTCCCTGAGATGGGTAACCAGGAGCCTGGTGTCACTGCAGCAGATCTTATCTTCGTGTTAGATGAGAAGCCACATGCTGTTTACAGGAGAGATGGTAACGACCTGGTGATTAACCAGGAGATAACTCTTCTGGAAGCCCTCACAGGTAAAACCCTTGAGCTCACCACGCTGGACGGAAGGAGTCTCGTGATCCCACTGACAGATATAGTGAAAGCCGGTGCCGAGATTGTTGTCCCTAATGAAGGAATGCCAATCCCAAAGGAACCTGGAAGGAAGGGGAATTTGAGAATTAAGTTTGACGTAAAATATCCATCAAGGCTAACTTCAGAGCAGAAATATGATCTGAGGAGAGTCTTGGGTGGAGTCTCGTA 1013 0.4669 MDYYNILKVNRNASDDDLKKAYKRLAMIWHPDRNRVNKSEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPSTSSSSSSRAYQHFPHHHRQHPTSFRFNPRDADDIYAEFFGSDSTSGGGGSSARNGGHRDRFFRTSNGSAFGASGRKAPAAEIVLPCSLEELYKGVNKKMKISRNVYDAFGKLLNVEEILTIEIKPGWKKGTKITFPEMGNQEPGVTAADLIFVLDEKPHAVYRRDGNDLVINQEITLLEALTGKTLELTTLDGRSLVIPLTDIVKAGAEIVVPNEGMPIPKEPGRKGNLRIKFDVKYPSRLTSEQKYDLRRVLGGVS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00437 337 CDD DnaJ_C 161 321 - -
Bva05g00437 337 PRINTS DnaJ domain signature 4 22 IPR001623 -
Bva05g00437 337 PRINTS DnaJ domain signature 40 60 IPR001623 -
Bva05g00437 337 PRINTS DnaJ domain signature 22 37 IPR001623 -
Bva05g00437 337 PRINTS DnaJ domain signature 60 79 IPR001623 -
Bva05g00437 337 Pfam DnaJ domain 2 65 IPR001623 -
Bva05g00437 337 Pfam DnaJ C terminal domain 161 318 IPR002939 -
Bva05g00437 337 SMART dnaj_3 1 60 IPR001623 -
Bva05g00437 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 239 IPR008971 GO:0006457|GO:0051082
Bva05g00437 337 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 336 - -
Bva05g00437 337 Gene3D DnaJ domain 1 132 IPR036869 -
Bva05g00437 337 MobiDBLite consensus disorder prediction 74 105 - -
Bva05g00437 337 CDD DnaJ 2 57 IPR001623 -
Bva05g00437 337 ProSitePatterns Nt-dnaJ domain signature. 45 64 IPR018253 -
Bva05g00437 337 SUPERFAMILY Chaperone J-domain 1 80 IPR036869 -
Bva05g00437 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 326 IPR008971 GO:0006457|GO:0051082
Bva05g00437 337 Gene3D - 160 237 - -
Bva05g00437 337 MobiDBLite consensus disorder prediction 75 90 - -
Bva05g00437 337 Gene3D - 239 319 - -
Bva05g00437 337 ProSiteProfiles dnaJ domain profile. 2 68 IPR001623 -
Bva05g00437 337 PANTHER BNAA06G20720D PROTEIN 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00437 Bva-Chr5 2161227 2163910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00437 3 72 C2H2 Transcription Factor Family AT1G74250 35.135 2.74e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00437 K09510 - gmx:100781572 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01270 06 9692160 9694921 Bva05g00437 05 2161227 2163910 ECH
Bva05g00437 05 2161227 2163910 Bva05g00437 05 2161227 2163910 ECH