Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00434 ATGGGGCATAAGAAGAGAAACCCTGCTCCACGTTCGAAACAATCCGGGGCGGCTTCTCCGGTGACACAATCCGCCATCGGCGGAGCCGCCAATGGTACTATTTCAGCAGAAGCCGAGTTGTGCGTCAATTCTAATCACACTCTTCATAGCCCAACTAAGATCGATGTGCCCCTTCAATCTGAGGGTTCCTCTTACTCCACAATCAAGCTTGAATGCGAGCGAGCCCTAACTGCGCTTAGGCGGGGTAACCACACCAAGGCACTGAGGCTAATGAAGGAGTCATGCTCCAGAAATGAGAACTCGGGTTATTTGGCCTTAATTCATCGAGTTCAGGGCACTGTATGTGTCAAAGTAGCGTCGATAATTGATGACCCTGGTGCGAAGCAACGACATTTGAGAAATGCAATTGAGTCGGCACGAAAAGCAGTTGAGCTGTCACCAAATTCCATTGAATTTGCTCATTTTTATGCAAATTTGCTATACGAGGCAGCAAATGAAGCGAAAGAATATGAAGAAGTGTTGCAGGAATGTGAGAGGGCGCTCTCGATTGAAAACCCAATTGATCCTGCGAAGGAGAGCTTGCAAGAAGAGAGCCAGCAAAAAATATCAACCGCTGAAGCTCGGATTTCACATATGCAGAATGAGTTGCGGCAGCTAATTCAGAAATCAAACATAGCTTCTTTATCGACTTGGATGAAAAATCTAGGTAGCGGGGAGGAGAAATTCCGGTTGATTCCAATAAGGAGGCCTACAGAAGACCCAATGGAGGTGAGGTTGGTTCAAACGAGAAGGCCAAATGAGATCAAGAAGGTGACTAAGACAcctgaagaaagaagaaaagaaattgaagttcGAGTGGCTGCTGCTAGGCTGTTGCAGCAGAAGTCAGAGTCACCCCAGGCTCAGaatgaaggagaaaaagatgACAGAATGGATTCGTCTTCAGGAGCTGGTCAGAGAACAAGTGAAAGACGGAGATATggaaatatgagaaaaaatggGTCTACAGCAGAAAGGAAGGATTGGGTACGCTCGCATTGGAATTCAAAGAGTCTTGATATGAAGAAGGATTTACTTAGAATCAGGGTTTGTGATCTCAAGTCCCACTTTGGATCTTCCAAGGATACTTTGCTGAATGATGTTATATCAGAAGCTTTGTCCTATGCTGAGGCCAATAAAACATGGAAATTCTGGCTTTGCTGCCGTTGCAATGAGAAATATTCAGATTCAGAATCTCACATGCAGCATATAGTGCAGGAGCACATGGGAAATCTCTTGCCAAAAATGCAGAGACTTTTGCCTCAAAATGTTGAAAGTGAATGGGCTGAGATGATTCGTAATTGTTCTTGGAAACCTCTGGATGCTTCAGCTTCAGTGAAGATGGTTGAAAAGCAagcaaaatgcaaaaattctACATTCCCTGAGGACTCTTTCCTGGGGGTTCACCACACTGAGGAGTACGAGGATTATTTTAAAGATGCAAGTGAATCTTGCTCTGAGAGGGAAAATTCAGGGTGTGACCTCCATGATTGTGCATCAGAAAGCagtaattattgtaaaattgCAGAAACTGATCCTAGAGGGCGTGTTGAGGTCCAAGGATCTATAGCATCTCCTCTCATTGATAGTTGGCCAATATCTGATGATCCTGAGCGCTCTAAACTTCTTGAGAAAATTCATACCATCTTTGAGACACTTATTAGACACAAATATCTCTCTGCTAGTCATCTTAACAAGGTCATACAATTTACGATGGATGAGATACAGGGTCTTGCTGCTGGTTCTCAGCTTTTAAACCGTGGCGTTGACCAGACACCAATGTGCATATGCTTTCTGGGAGCTTCCCAGCTTaagaaaattctcaaatttttgcaAGAACTGGCTCATGCTTGTGGCTTGGGTAGATACGCTGAGACAAGTAGTAATCCTATGGATGATTCGCAAAATGCCAGTAAAGGTCCTGAGATCAAAGAGAATATTGTTCTTGATGGAGATGCATCATGCCTCCTTCTGGATGAGTGTTTATTGCCAACAGAAGTCACTACTAGTGCAGCTCAGGGTACTGCCTTGGATGATGGGACTGCCCCAACTTCTCTTGAAGGGGATTTACACAATACCGATGCTTTGCTGTCCTGGATATTTTCAGGTATGTCTAGTGGGGATCAACTGTCATCATGGATGCAcacaaaagaagataaaaggcATCAAGGAATGGAAATTGTCCAGATGCTTGAGAAGGAATTTTATCACCTACAGAGCCTTTGTGAGAAGAAATGTGAGCGTATAAGTTCTGAGGAAGCACTGCAGGCGGTAGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGAAAATGTCAGTGAATTTGTCCAGCGAAGCTATGAATCTGTGCTAAGAAAGCGGAGAGAAGAGCTCATTGAGAGTGAGAATGATGTCATGTATGTTAGTAATAGGTTTGAGTTGGATGCCATATCAAATGTTCTGCAAGAAGCAGAATCTATGAACGTTAATCAATTTGGCTACGAGGAAACCTATCCTGGTGTCACTTCTCAGCTGTGTGATTTGGAATCTGGTGAAGATGATGAATGGAGAATGAAGGACTATTTGCATCACATGGATAATTGCATAGAAATTGCTattcagaaaatgaaagaacatTTGTCTATAGAGCTGAGCAAAATTGATGCTCGAATCATGAGAAGTGTTACTGGAATGCAACAGTTGGAGCTCAAGCTTGAGCCTGTTTCTGCTCATGATTATCGATCAATATTATTGCCTTTAGTGAAGTCATACTTAAGGGCACACTTGGAAGATTTGGCTGAGAAAGATGCCAGAGAGAAGTCTGATGCTGCAAGAGAAGCATTTTTGGCAGAACTTGCTCTTGATTCAAAGAAGGTTGTTAAAGGGGGCATTGACCCAAGACACTTGgagaagaaagacaagaaaaagaataaagagaacAGGAAAATAAGAGATTCAAAGACTACAGGTGGTCATGAGCAGCTCTTGCTTCAAGCCACAATCCCTGATTCAGTTTGCTATACAGTTGAACCTGATAGTGATCATCAGGATTCTGAGATTGTTGTTTCTGTGAATAATGATGACTTGGAACAACAGGAAGAGGAATTTCGACGTAAAATGGAGCTGgaagaggaggaaaaaaagCTGGAAGAAACATTAGAGTTTCAGCGACGGATAGAAAATGAGGCCAAACTGAAGCACCTTGCTGAGCAACAAAGGAAATCCTCTGGAACATATTTAGAGAAAGTGACAGACAAGTTTCAGGATGCTCCTTTGAAGGTTGTTACTGATGGTCCAGATGCTGATGTGCTGATGAGACCATCTATGCTGGAGCAGTCGGCAAAGGAGAATGGATATTCAAGCAATCTAGATGGTATGTTTGTTAACTCAGTAAATGGTTCCATAGTGCCACATAAAACTTCACAAATGCATCAGTCAAAAGTTAGGCAAGATCCACCTAATGAAGGAGTTCTAGAGAATGGTCTTCAGTTGCTTGACCGGCGTATGGGAAAAAAGGGTAAGCGTCATAAGAATTCTTCCAGATTGGTTGATGGAAAGTCTGAAGTTGTCCCATTGGAAAAGGAGAACATCGAGGTCACAAATAGTGACAACCACTATACAGAGCTGATCAAATTCCATAATAATCAAGATTCGAACAATGTAATGGGAGACAATGGATCAAAGTCACTGAGAGAATTGCAAGCAGAGGATGACGAGGAGGAAAGATTCCAAGCTGATCTTGAAAAAGCAGTGCGCCAGAGCCTGGACACATATCAAGCACATAAAAAATTGCCCTCAGTTTCAAATTTGAGAATGCCCCAGAGAGCTTCACTATTAGATAATTTGGGTGCTTCACCAGAAGAGAACATAATTGACAATGTGGATGGAGCTAATTTGCTGGGTGCTGGGCTGAAGAATGAAGTGGGTGAATATAATTGCTTTCTCAATGTTATTATACAGTCCTTATGGCATTTAAGACGGTTTCGAGAGGATTTTCTTCGCAGATCAAGATCAGAGCATGATCATGTGGGCAATCCTTGTGTTGTTTGTGCATTGTATGAAATCTTTTATGCCATGGACGCTGCATCAAAGGATTCCAGAAGAGAAGCAGTAGCCCCTACTTCCTTGAGGATAGCTCTAAGCAACCTATATCCAGATAGTAACTTCTTCCAGGAGGCCCAAATGAATGATGCTTCTGAAGTACTGGCTGTGATATTTGACTGTCTTCACCGATCATTTACTCGTGGTTCAAGTGTTTCTGATACAGAATCAGTGGAAAGCAACTGCACGGGATCTTGGGATTGTGCACATGGCACTTGTATAGCACATTCACTCTTTGGAATGGATATTTTTGAGCGAATGAACTGCTATCATTGCGGTCTTGAGTCCAGACATTTAAAGTATACTTCCTTTTTTCACAATATAAATGCCAATGCCCTCCGCACAATGAAGGTTATGTGTTCTGAAAGCTCCTTTGATGagcttttgaattttgtggAGATGAATCATCAATTGGCTTGTGATCCAGAGGCAGGCGGATGTGGCAAGCTCAACTACatccatcattttctttcaactccACCCCATGTTTTTATGACAGTTTTAGGTTGGCAGAATACATGTGAGAGTGTTGATGATATAACAGCTACTCTGGCAGCACTCAACACTGAAATAGATATCAGTGTCCTCTATCGTGGTTTAGATCCTAAAAACACCCATAGCTTGGTTTCAGTGGTTTGCTACTATGGGCAACATTACCATTGCTTTGCCTATAGCCATGACCAAGAACGGTGGATTATGTATGACGACAAGACAGTCAAGGTAATTGGTGGATGGTCTGATGTTCTCACAATGTGTGAAAGAGGGCATTTACAACCCCAGGTTCTTTTCTTTGAAGCTGTAAACTA 4925 0.4079 MGHKKRNPAPRSKQSGAASPVTQSAIGGAANGTISAEAELCVNSNHTLHSPTKIDVPLQSEGSSYSTIKLECERALTALRRGNHTKALRLMKESCSRNENSGYLALIHRVQGTVCVKVASIIDDPGAKQRHLRNAIESARKAVELSPNSIEFAHFYANLLYEAANEAKEYEEVLQECERALSIENPIDPAKESLQEESQQKISTAEARISHMQNELRQLIQKSNIASLSTWMKNLGSGEEKFRLIPIRRPTEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQAQNEGEKDDRMDSSSGAGQRTSERRRYGNMRKNGSTAERKDWVRSHWNSKSLDMKKDLLRIRVCDLKSHFGSSKDTLLNDVISEALSYAEANKTWKFWLCCRCNEKYSDSESHMQHIVQEHMGNLLPKMQRLLPQNVESEWAEMIRNCSWKPLDASASVKMVEKQAKCKNSTFPEDSFLGVHHTEEYEDYFKDASESCSERENSGCDLHDCASESSNYCKIAETDPRGRVEVQGSIASPLIDSWPISDDPERSKLLEKIHTIFETLIRHKYLSASHLNKVIQFTMDEIQGLAAGSQLLNRGVDQTPMCICFLGASQLKKILKFLQELAHACGLGRYAETSSNPMDDSQNASKGPEIKENIVLDGDASCLLLDECLLPTEVTTSAAQGTALDDGTAPTSLEGDLHNTDALLSWIFSGMSSGDQLSSWMHTKEDKRHQGMEIVQMLEKEFYHLQSLCEKKCERISSEEALQAVEDLCLEEGKKRENVSEFVQRSYESVLRKRREELIESENDVMYVSNRFELDAISNVLQEAESMNVNQFGYEETYPGVTSQLCDLESGEDDEWRMKDYLHHMDNCIEIAIQKMKEHLSIELSKIDARIMRSVTGMQQLELKLEPVSAHDYRSILLPLVKSYLRAHLEDLAEKDAREKSDAAREAFLAELALDSKKVVKGGIDPRHLEKKDKKKNKENRKIRDSKTTGGHEQLLLQATIPDSVCYTVEPDSDHQDSEIVVSVNNDDLEQQEEEFRRKMELEEEEKKLEETLEFQRRIENEAKLKHLAEQQRKSSGTYLEKVTDKFQDAPLKVVTDGPDADVLMRPSMLEQSAKENGYSSNLDGMFVNSVNGSIVPHKTSQMHQSKVRQDPPNEGVLENGLQLLDRRMGKKGKRHKNSSRLVDGKSEVVPLEKENIEVTNSDNHYTELIKFHNNQDSNNVMGDNGSKSLRELQAEDDEEERFQADLEKAVRQSLDTYQAHKKLPSVSNLRMPQRASLLDNLGASPEENIIDNVDGANLLGAGLKNEVGEYNCFLNVIIQSLWHLRRFREDFLRRSRSEHDHVGNPCVVCALYEIFYAMDAASKDSRREAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDTESVESNCTGSWDCAHGTCIAHSLFGMDIFERMNCYHCGLESRHLKYTSFFHNINANALRTMKVMCSESSFDELLNFVEMNHQLACDPEAGGCGKLNYIHHFLSTPPHVFMTVLGWQNTCESVDDITATLAALNTEIDISVLYRGLDPKNTHSLVSVVCYYGQHYHCFAYSHDQERWIMYDDKTVKVIGGWSDVLTMCERGHLQPQVLFFEAVN 1641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00434 1641 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1308 1640 IPR028889 -
Bva05g00434 1641 Pfam Ubiquitin carboxyl-terminal hydrolase 1317 1617 IPR001394 GO:0004843|GO:0016579
Bva05g00434 1641 MobiDBLite consensus disorder prediction 291 338 - -
Bva05g00434 1641 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
Bva05g00434 1641 Gene3D Cysteine proteinases 1300 1639 - -
Bva05g00434 1641 Coils Coil 1032 1068 - -
Bva05g00434 1641 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1641 - -
Bva05g00434 1641 SUPERFAMILY Cysteine proteinases 1308 1638 IPR038765 -
Bva05g00434 1641 MobiDBLite consensus disorder prediction 1 24 - -
Bva05g00434 1641 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1641 - -
Bva05g00434 1641 SUPERFAMILY TPR-like 70 186 IPR011990 GO:0005515
Bva05g00434 1641 MobiDBLite consensus disorder prediction 324 338 - -
Bva05g00434 1641 Coils Coil 160 180 - -
Bva05g00434 1641 Coils Coil 195 222 - -
Bva05g00434 1641 Pfam Protein of unknown function (DUF629) 343 877 IPR006865 -
Bva05g00434 1641 MobiDBLite consensus disorder prediction 969 998 - -
Bva05g00434 1641 Pfam Protein of unknown function (DUF627) 74 185 IPR006866 -
Bva05g00434 1641 Gene3D Tetratricopeptide repeat domain 52 306 IPR011990 GO:0005515
Bva05g00434 1641 CDD Peptidase_C19 1399 1638 - -
Bva05g00434 1641 Coils Coil 1239 1259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00434 Bva-Chr5 2140730 2149498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00434 1 1638 C2H2 Transcription Factor Family AT3G47910 58.373 0.0 1805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00434 - - adu:107493676 2290
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01273 06 9707769 9716368 Bva05g00434 05 2140730 2149498 ECH
Bva05g00434 05 2140730 2149498 Bva05g00434 05 2140730 2149498 ECH