Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00421 ATGGATCCTCCACTCATCAACGAGTCTACATTCTCTCCCGCTAACCCATCTGCTTACAGCTTGGCTGAGATTTGGCCTTTCAGTGGGGAACTGGGTAGCGGAGGATTGGGCCTCCGAATGGGTAATTTGACTCGGAACTTGGGTGATTTTGCTGACACTTCGATGCATCGAGATGGGTCGGCGGAGGAATCCACTGTCACGGAGCAGAGTGGCGGTGGAGGTGCTAGTGCCAGTGGAATCCGAAGGAAGAGGAAAGATGCCAACTCGGAGGACGAGTCATCGAAGATGGTTTCGACTAGTAGCGCCAATGAATTGAATGATTCTGGCAAAAAACGGATAAAATTAGGAGGATCAGGGGATGAAAATAGTGGAGTAAAAGCTGAAGCAGAAGCAAGTTTTGCAGGTGGCAGCAAGTCATCTGAACAAGGTACTAAACCTTCTGAGACACCTAAGCAAGACTATATACATGTCAGAGCAAGAAGGGGTCAAGCTACCGATAGCCACAGTCTTGCAGAAAGAgcaaggagagaaaaaatcaGCGAGCGAATGAAGAGTCTGCAAGATTTGGTCCCAGGATGTAACAAGGTAATTGGTAAAGCACTTGTCCTAGAtgagataataaattacaTCCAGTCTCTCCAGCGTCAGGTTGAGTTCCTCTCAATGAAGCTTGAAGTCGTTAATTCAAGATTGAACATGAACCCTACCATCGAAGGGTTTCCTTCAAAAGATCTCGGTACTCAGCCATTTGACGTTGCTGGAATGCTATTTGGATCACAAGCAGCCAGAGGGCTTGCTACCGGATCGCAACCTGGATGGCTGCATATGCAGATAGGTGGTAGTTTCGAGAGAGCAACATA 860 0.4616 MDPPLINESTFSPANPSAYSLAEIWPFSGELGSGGLGLRMGNLTRNLGDFADTSMHRDGSAEESTVTEQSGGGGASASGIRRKRKDANSEDESSKMVSTSSANELNDSGKKRIKLGGSGDENSGVKAEAEASFAGGSKSSEQGTKPSETPKQDYIHVRARRGQATDSHSLAERARREKISERMKSLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSRLNMNPTIEGFPSKDLGTQPFDVAGMLFGSQAARGLATGSQPGWLHMQIGGSFERAT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00421 286 Coils Coil 210 230 - -
Bva05g00421 286 MobiDBLite consensus disorder prediction 51 154 - -
Bva05g00421 286 MobiDBLite consensus disorder prediction 135 149 - -
Bva05g00421 286 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 286 IPR024097 GO:0006355
Bva05g00421 286 CDD bHLH_AtBPE_like 153 236 - -
Bva05g00421 286 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Bva05g00421 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Bva05g00421 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 233 IPR036638 GO:0046983
Bva05g00421 286 Gene3D - 160 237 IPR036638 GO:0046983
Bva05g00421 286 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 286 - -
Bva05g00421 286 SMART finulus 169 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00421 Bva-Chr5 2078952 2081975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00421 1 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 58.076 2.04e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g00421 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00421 - - zju:107418528 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01285 06 9763693 9766381 Bva05g00421 05 2078952 2081975 ECH
Bva05g00421 05 2078952 2081975 Bva05g00421 05 2078952 2081975 ECH