Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00402 ATGGCTTCCTCTGCCGCAATCCAAGGTTCCTCCGCCAAGCACTGCACCTATAACCGGAAACAGAAATCTCTGGGCCTTCTTTGCACTAATTTCTTGAGCTTGTATAATCGTGATGGCATCCATTTGATTGGACTTGACGATGCGGCAGCACGATTAGGGGTCGAGAGACGGCGAATCTATGACATAGTTAATGTATTGGAAAGTATCGGGGTGCTTGCAAGAAAAGCCAAGAATCAGTATACTTGGAAAGGCTTTGGGGCAATTCCTGGAGCTTTGCAGGAGCTTAAGGAAGAGGGTATGAGGGAGAATTCCAATGCCTTTGATGGTGGCAACGATGTTTACAATGGAAAAGTGTCTGATGATGAGGATGACGAAGAAACATTGTCCAATCCAAGTACTGGAAGTCAGAATGACAAGTCTAATCCTAATTCTGGTCTTCTCAAATCCTTGAAGAATgATAACCGAAGGGAAAAATCCCTGGCAATTCTTACTCAAAATTTTGTCAAGCTCTTTGTCTGCTCTAATGTAGTGTTGATCTCCCTTGATGATGCTGCAAAGTTGTTGCTCGGGGATgctcataatacatcaataatGAGAACAAAAGTTAGACGTCTATATGATATTGCAAATGTGCTGTCTTCTATGAACTTAATTGAGAAGACTCATACATCGGACACAAGAAAGCCAGCATTCAAGTGGCTAGgtttgaaaggaaaaacagaGAGTGAATCTGCTCCCAATTCAAGTCTTAATGAATCCAGGAAGAGGGTGTTTGGAGAAGATGTCACAAACATCAATTTTAAGAGGAGTAAAGTGGATTTTTTCATCAATGGGGATTTGAACCAGAACTCTAAGatgcaaaataaattgaacaaTGGCAGTTGGTTGGGTCAGGCAGATAAAAGTTGTtcaaagaaagaatcaaaacaAACTTCAAGGGGTTATCAGTTTGGTCCTTTTGCTCCCACAATTGTCCCTATAGCGAGTGCCTCcgagaagaaaaatgtgaagCAGGTCCATGACTTGGATAATCTAGCATCTGCTTTTCGTCCACAATATCACAACCAAGCTTTGAGAGACCTATTCTCCCATTATATGGAAGCATGGCAATCATGGTACTCTGAAGTCGCTGGAAAGAGGCCAATACAAATTCTGTA 1157 0.3915 MASSAAIQGSSAKHCTYNRKQKSLGLLCTNFLSLYNRDGIHLIGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPGALQELKEEGMRENSNAFDGGNDVYNGKVSDDEDDEETLSNPSTGSQNDKSNPNSGLLKSLKNDNRREKSLAILTQNFVKLFVCSNVVLISLDDAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFKWLGLKGKTESESAPNSSLNESRKRVFGEDVTNINFKRSKVDFFINGDLNQNSKMQNKLNNGSWLGQADKSCSKKESKQTSRGYQFGPFAPTIVPIASASEKKNVKQVHDLDNLASAFRPQYHNQALRDLFSHYMEAWQSWYSEVAGKRPIQIL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00402 385 MobiDBLite consensus disorder prediction 291 313 - -
Bva05g00402 385 MobiDBLite consensus disorder prediction 129 149 - -
Bva05g00402 385 MobiDBLite consensus disorder prediction 102 151 - -
Bva05g00402 385 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 1 376 - -
Bva05g00402 385 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
Bva05g00402 385 SUPERFAMILY "Winged helix" DNA-binding domain 157 236 IPR036390 -
Bva05g00402 385 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Bva05g00402 385 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667|GO:0006355
Bva05g00402 385 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Bva05g00402 385 Pfam E2F/DP family winged-helix DNA-binding domain 157 235 IPR003316 GO:0005667|GO:0006355
Bva05g00402 385 Gene3D - 14 87 IPR036388 -
Bva05g00402 385 Gene3D - 150 237 IPR036388 -
Bva05g00402 385 PANTHER TRANSCRIPTION FACTOR E2F 1 376 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00402 Bva-Chr5 1992436 1995561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00402 14 382 E2F-DP Transcription Factor Family AT3G48160 58.981 7.72e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Bva05g00402 E2F_TDP 3.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00402 K09391 - gmx:100806151 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00402 05 1992436 1995561 Bva06g01302 06 9844714 9847823 BWGD
Bva05g00402 05 1992436 1995561 Bva05g00402 05 1992436 1995561 ECH