Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00398 ATGGGTGGCAATCGCAAGCACAGGTGGAAATTCTCTTTCCATCGTTCTTCGTCCAACTCAAAGCTGGATTTGAAGCAACCACCAAAGGAGTTTACGTGCCCAATCTCTGGGGTTTTAATGTCGGACCCAGTAGTTGTTGCTTCGGGTCAGACCTTCGAACGAGTTGCTGTTCAAGTATGCAAAGATTTGAACTTCTCCCCGAAGCTGGAAGACGGGTCCAGACCCGATTTCTCTGCCATAATTTCCAATAATGCATTCAAAAGGACGATGATCCATTGGTGCGATCAATCGGGAACGGAGCACCCGCACGCACCCGATTACAGTTCCGTGGAGAGGGTTGTCCGTGCAGCAATGGCGTCCCAACCCGATATAAAAGCTTCGGAGAGGGAATTGCTCGAGGGCGTGGCTGATAACCCGGCGGTGATTTACTCTCATGCTGCGACCGAGTTGGGTCGCCGGGTCACCCACTTCAACTCAAGCTCGTCCGAGGAATCGGTAATTATTGCGGCGAGTCCTGGAACCCCTCTGCCTTTAACGATTCGTCCCACCTGTTACTCTTCGGCGTCGTCTTCCTCCGAAATCACAGAGACTGATATCCAAAACCCTAGTGGCCCAGCTTCAGAGGAAGAGGAGAAATTGGTCGCGAAATTCAGGAGCGAGGAAGTGTTCGAGCAAGAAGAAGCCGTGGTTTCACTGAGAAGCATGACCAGAAGCAGAGACGACAGCAGGGTCTCCCTGTGCTCCCCTCGACTGCTCTCTGCCTTGCGACCCTTGATCGTCTCCAGGTACTCTGTTGTTCAAGTGAACGCCGTCGCTTCATTGGTCAACCTTTCGCTGGAAAAATCCAATAAGGTGAAGATCGTAAGGTCAGGATTCATCCCCTTTCTTATTGACGTCTTGAAAGGGGGATTCCCCGAGTCGCAGGAACACGCTGCAGGTGCACTATTTAGCTTAGCCTTAGACGATGATAACAAAATCGCTATTGGTGTTCTTGGCGCATTACAGCCACTCATGCACGCGTTGAGGTCCGAGTCCGAAAGGACCCAGCATGACTCGGCGCTGGCGTTGTATCACTTGACCTTAGTTCAAAGCAACCGGGTCAAACTCGTAAAACTCGGCGCGGTGCCGACGCTTCTGACGATGGTGAGATCGGGGAAGTCGGCGAGCCGGGTTTTGCTAATTCTGTGTAATCTTGCGGTGTGTAACGAGGGGCGTACGTCGATGCTGGACAGTAATGCGGTGGAGTGCCTGGTGGGGTTGCTGAGGAGTAGAGAGTTAGAATCGGAGGCGACTCGGGAGAACTGTGTGGCGGCGTTGTATGCTCTTAGCCATGCGAGATTGAGGTTCAAAGGATTGGCAAAGGAGGCAAGGGCAGTGGAAGTGTTAAAGGAGATTGAAGAGAGAGGAACAGAGAGGGCCAGAGAGAAGGCCAAGAGATTATTGCAGATGATGAGGGCAgcaggagaaggagaagatgaTGACGGAATCGATTTCGATGGGATTTCGGGAACTGGCGGGTTAAATCGAAATCGGTTTCGAGTTGGAGGAGGCAGAAGTGTCAAGCTATATTTTAATGCAAGATTAGAAGGGCAGAAGACAATGGAAAAGAGGCGCAAGAGAAAACGGGTTGAGCTCGAGGGAGAGTCAAAGTTGAAGTCTTCCAACAAGACCGGTGAAACCACAATTGGCGCGAGTAACAACAGCGAAGTGAGAGAGCCATACCCAGATCATGGTCCACCCACCCCAGAGGAATGCCGAGCCGTACGCGACAGTCTATTGGCGGAACACGGTTTTCCCCAAGAGTTCGCCAAGTATCGCAGACAAACAACAGAAGATGGTGTGAAATCGAAGCCATTCGATGATGCCCAAGAGAGTGTTCTGGACGGTTTAGTTAGAACTGTGCTCTCCCAGAATACTACAGATGCCAATTCCCAAAGGGCCTTTGCCTCCCTCAAATCCTCCTTTCCTAATTGGCAAGACGTTCTTAATGCTGACTCGAAAGATGTACAGAATGCCATTCGATGTGGAGGTCTAGCCCCAACTAAGGCTTCTTGTATTAAGAATGTATTAAGTTGCTTGCTTGAGAAAAGAGGCAAATTATGCTTGGAGTATTTGCGAGACTTGTCTGTTGATGAAATTAAGTCTGAGCTGTCACTTTTCAAAGGAATTGGTCCCAAAACGGTGGCTTGCGTCTTGATGTTCAATCTTCAGCGCGATGATTTCCCTGTGGACACGCATatATTTGAGATTGCCAGAGCGATGGGTTGGGTACCAGCTGCTGCAGAcagaaataaaacatatctTCATCTAAACCAACGGATCCCAGACGAACTCAAGTTTGACCTAAACTGTCTTCTGTTTACTCATGGTAAGCTGTGCAGAAGATGTACCAGTAAAAAGGGTAAccggcaaaaagaaaagtgttgtCATAACTCCTGTCCCTTATTGAGTTACTGTAAGGACCCagtttg 2471 0.486 MGGNRKHRWKFSFHRSSSNSKLDLKQPPKEFTCPISGVLMSDPVVVASGQTFERVAVQVCKDLNFSPKLEDGSRPDFSAIISNNAFKRTMIHWCDQSGTEHPHAPDYSSVERVVRAAMASQPDIKASERELLEGVADNPAVIYSHAATELGRRVTHFNSSSSEESVIIAASPGTPLPLTIRPTCYSSASSSSEITETDIQNPSGPASEEEEKLVAKFRSEEVFEQEEAVVSLRSMTRSRDDSRVSLCSPRLLSALRPLIVSRYSVVQVNAVASLVNLSLEKSNKVKIVRSGFIPFLIDVLKGGFPESQEHAAGALFSLALDDDNKIAIGVLGALQPLMHALRSESERTQHDSALALYHLTLVQSNRVKLVKLGAVPTLLTMVRSGKSASRVLLILCNLAVCNEGRTSMLDSNAVECLVGLLRSRELESEATRENCVAALYALSHARLRFKGLAKEARAVEVLKEIEERGTERAREKAKRLLQMMRAAGEGEDDDGIDFDGISGTGGLNRNRFRVGGGRSVKLYFNARLEGQKTMEKRRKRKRVELEGESKLKSSNKTGETTIGASNNSEVREPYPDHGPPTPEECRAVRDSLLAEHGFPQEFAKYRRQTTEDGVKSKPFDDAQESVLDGLVRTVLSQNTTDANSQRAFASLKSSFPNWQDVLNADSKDVQNAIRCGGLAPTKASCIKNVLSCLLEKRGKLCLEYLRDLSVDEIKSELSLFKGIGPKTVACVLMFNLQRDDFPVDTHIFEIARAMGWVPAAADRNKTYLHLNQRIPDELKFDLNCLLFTHGKLCRRCTSKKGNRQKEKCCHNSCPLLSYCKDPV 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00398 823 SMART endo3end 635 792 IPR003265 GO:0006284
Bva05g00398 823 MobiDBLite consensus disorder prediction 539 553 - -
Bva05g00398 823 Pfam HhH-GPD superfamily base excision DNA repair protein 631 774 IPR003265 GO:0006284
Bva05g00398 823 CDD ENDO3c 630 790 IPR003265 GO:0006284
Bva05g00398 823 SUPERFAMILY RING/U-box 13 102 - -
Bva05g00398 823 CDD RING-Ubox 33 68 - -
Bva05g00398 823 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Bva05g00398 823 SUPERFAMILY DNA-glycosylase 624 820 IPR011257 GO:0003824|GO:0006281
Bva05g00398 823 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Bva05g00398 823 Gene3D - 207 486 IPR011989 -
Bva05g00398 823 SUPERFAMILY ARM repeat 212 484 IPR016024 -
Bva05g00398 823 Pfam Armadillo/beta-catenin-like repeat 321 360 IPR000225 GO:0005515
Bva05g00398 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 100 IPR013083 -
Bva05g00398 823 MobiDBLite consensus disorder prediction 533 584 - -
Bva05g00398 823 MobiDBLite consensus disorder prediction 554 568 - -
Bva05g00398 823 SMART arm_5 280 320 IPR000225 GO:0005515
Bva05g00398 823 SMART arm_5 239 279 IPR000225 GO:0005515
Bva05g00398 823 SMART arm_5 321 361 IPR000225 GO:0005515
Bva05g00398 823 SMART arm_5 401 444 IPR000225 GO:0005515
Bva05g00398 823 Gene3D - 743 820 IPR023170 -
Bva05g00398 823 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 517 - -
Bva05g00398 823 Pfam U-box domain 28 67 IPR003613 GO:0004842|GO:0016567
Bva05g00398 823 Gene3D Hypothetical protein; domain 2 624 742 - -
Bva05g00398 823 PANTHER U BOX DOMAIN-CONTAINING 1 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00398 Bva-Chr5 1964054 1969259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00398 27 516 U-box Gene Family AT5G65200 61.014 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00398 - - gmx:100784564 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00398 05 1964054 1969259 Bva05g00398 05 1964054 1969259 ECH