Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00379 ATGAATACGGTGAATCATAAACTCAATCAAAGAGATCGTCGTTTCCTTTCATTACCGGCGGTGCATCCTTGCGAAGGCGTATCTCCTGCCACCCTTGTGACCTCTTTGATTACCCTATCGCAAAAGATATGTAGTTTCCAATCCAAATTGTTTCCCATCCAGCGACGAAATGCCAGAGAAACAATACGCCAAATTGGTATCATTCTCATATTCCTGGAGGAAATTCGAGAGCGCGGTTTGATGATCCCGGACTCTGTTGTTCTTTGCTTCTCGGAGCTCCACGTCTGCTTTCAAAAACTTCACTTTTTAATGGAAGACTGTACTCGTGATGGTGCTAGCCTTTGGATGCTAATGAAATCTCAATTGGTCGCAGCCCAATTTCGGCAACTAATTCGTTCGGTAGCCACTGCTCTTGACGTTCTGCCCTTGCATCTCATCGAAGTTTGTGGTGAAGTGAAAGAGTTAGTGGAATTAGTAGCCAAGCAAGCTCGGAAAGTGAAGTTCGAAGTCGACCCAGATGACGAACGAACGAGCAAAAtggttcattttgttttgagtCAGTTTGAGAGGGGAACCGAACCCGATTCGAATACTATGCAGCAAATCCTTGATTACCTGGAAATTAAGAGCTGGGCTGATTGTAACCAAGAAATCAGATTCTTAGAAGATGAGATTAGTTTCCAGTGCTCTGATTGTGATGAAAGAGAGCTCCCATTCTTGAGCGATTTGCTCGGGTTCTTAAACTACTGCAGGGGAGTGATATTTAAAACTCTGGATTTGAGCATAGGCAACGCCACGGATCAATCCGAAGGTAGGTGCAGCACAGAGATTCATACTTGCATAAATCCAGAGGATTTTCGGTGCCCAATTTCCCTGGAGCTAATGACTGATCCCGTCACGGTATCCACGGGCCAAACTTATGATCGAGCTTCTATTCAGAAATGGTTCAAAGCTGGAAACATGATATGCCCCAAAACAGGAGAGAAGCCAACAAGCACAGACTTGGTCCCTAACACAACACTCAAGAACCTAATCCAACAGTTCTGTGCTGATAATGGCATTTCTCTCACGAAGTCCGGTAACCAGAGTCGTGACATATCGAGGACCATCGTCCCGGGAAGTCCAGCCGCAGCTCAAGCCATgcaatttctttcttggtttcttgCACGGAGGCTTGTGTTCGGAACAAGTGAGCAGCAAAACAAAGCTGCTTATGAGATTCGTTTGCTTGCAAGGTCCAACATTTTCAACAGGGCTTGCTTGATTCAAGTGGGCACAGTGTCGTCTCTACTAAATCTTTTGAGTACAGATGATAAATCCATGCAAGAGACCGCAATCGCTGCTTTGGTGAAGCTCGCAAAGCATAATGATGGCAAGGAAATGATCATCGAAAGCGGAGGTCTGACACAGGTCCTTATTGTTCTCGAAAGTGGGCTAAGTTTGGAAGCTCGGCAAAGCGCAGCTGCTGTtgtattttatctttgttcGGTGAAAGAGAACAGGAAATTGATTGGAGAAAACCCCAAGGCAATTCCAGCGTTAGTAGAGTTACTCAAGGAAGGAACGACTCTGGGGAAAAAGAATGCTGTGGTTGCCCTTTTTGGGCTGCTTTTACTTCCCAAAAATCATCAGAGGGTGCTTGCAGCTGGGATTGTTCCTGCGCTGCTTGATATTTTAGCTACCTCAGAAAAAGCTGACCTTGTCACTGATTCTTTAGCGGTTCTTGCAGCTTTGGCCGAGAATGTTGAGGGAGCATATGCTATTTTACAAGCCTCGCCTTTGCCTTTAATCGTTGGGATTTTGCAAACATTAACATCCCGTGCAGGGAAAGAGCACTGTGTTTCAATTTTGCATTCGCTGTGTGTGAATGTGGGTGCAGAGGTGGTGGGTGTTCTCGCAAAGGACCCTTCTCTCATGCCTTCGCTTTACTCGCTCGTCACCGATGGTACCTCTCATGCAACCAAGAAAGCACGTTCCCtcatcaaaattttacttgaattcAACCAAGCTACCAGTTCTCGATTCATGGGTTCATCAGTTGCACAAGAACGATCCCTTCACGTTTGGTG 2069 0.4442 MNTVNHKLNQRDRRFLSLPAVHPCEGVSPATLVTSLITLSQKICSFQSKLFPIQRRNARETIRQIGIILIFLEEIRERGLMIPDSVVLCFSELHVCFQKLHFLMEDCTRDGASLWMLMKSQLVAAQFRQLIRSVATALDVLPLHLIEVCGEVKELVELVAKQARKVKFEVDPDDERTSKMVHFVLSQFERGTEPDSNTMQQILDYLEIKSWADCNQEIRFLEDEISFQCSDCDERELPFLSDLLGFLNYCRGVIFKTLDLSIGNATDQSEGRCSTEIHTCINPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWFKAGNMICPKTGEKPTSTDLVPNTTLKNLIQQFCADNGISLTKSGNQSRDISRTIVPGSPAAAQAMQFLSWFLARRLVFGTSEQQNKAAYEIRLLARSNIFNRACLIQVGTVSSLLNLLSTDDKSMQETAIAALVKLAKHNDGKEMIIESGGLTQVLIVLESGLSLEARQSAAAVVFYLCSVKENRKLIGENPKAIPALVELLKEGTTLGKKNAVVALFGLLLLPKNHQRVLAAGIVPALLDILATSEKADLVTDSLAVLAALAENVEGAYAILQASPLPLIVGILQTLTSRAGKEHCVSILHSLCVNVGAEVVGVLAKDPSLMPSLYSLVTDGTSHATKKARSLIKILLEFNQATSSRFMGSSVAQERSLHVW 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00379 689 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Bva05g00379 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 593 IPR000225 GO:0005515
Bva05g00379 689 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Bva05g00379 689 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Bva05g00379 689 CDD RING-Ubox_PUB 286 328 IPR045210 -
Bva05g00379 689 PANTHER OS07G0532750 PROTEIN 9 673 - -
Bva05g00379 689 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Bva05g00379 689 Gene3D - 381 679 IPR011989 -
Bva05g00379 689 SUPERFAMILY RING/U-box 282 355 - -
Bva05g00379 689 PANTHER U BOX DOMAIN-CONTAINING 9 673 - -
Bva05g00379 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Bva05g00379 689 Pfam Armadillo/beta-catenin-like repeat 417 453 IPR000225 GO:0005515
Bva05g00379 689 SMART arm_5 498 538 IPR000225 GO:0005515
Bva05g00379 689 SMART arm_5 539 580 IPR000225 GO:0005515
Bva05g00379 689 SMART arm_5 455 496 IPR000225 GO:0005515
Bva05g00379 689 SMART arm_5 413 454 IPR000225 GO:0005515
Bva05g00379 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 356 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00379 Bva-Chr5 1878731 1881139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00379 6 689 U-box Gene Family AT1G60190 42.385 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00379 - - cit:102613373 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01338 06 10003482 10005533 Bva05g00379 05 1878731 1881139 ECH
Bva05g00379 05 1878731 1881139 Bva05g00379 05 1878731 1881139 ECH