Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00375 atgaagaaatccAGCAATTCTGAATCCTCCAAACTTGATCGCAAAACCATAGAGAGGAATCGTAGAATTCACATGAAAGCTCTTTGCTTCAAGCTCGGCACTCTCATTCCTTCCCACTACGTCAAACCCACCAAGGATATGATGTCGCAGCAAGACCAGCTTGACCTCGCAGCTGCCTACATAATCCAtctgaaagaaaaagtagaaaaattaaaggggCAAAAGGAGCAAGCCTTAAGGTCAAGCGCATCAAACAGTACCAGTAATGTAACGAACCAAATCTTTATTGCCTCGAAATTGCCTGTACTTGAATTAAGAGACATGGGTTCCTGCATCGAAGTTATGCTCATAACTGGATTGAACAAGAACTTCATGCTCTATGAAGTTATCAGTATCCTCGAAGAAGAAGGTGCTGAAGTCGTGAGTGCTAGTTTCTCCACCGTTGGTGATAAGATTTTTCACACTGTTCATGCCCAGGTTAAAATTTCAAGAGTTGGTATAGAGTCTTCAAGGGTTCATCAAAGGCTTCGAGAGTTGATTGCTCCGTTAGAAAGCTGGGACTATTTAGCATG 572 0.3986 MKKSSNSESSKLDRKTIERNRRIHMKALCFKLGTLIPSHYVKPTKDMMSQQDQLDLAAAYIIHLKEKVEKLKGQKEQALRSSASNSTSNVTNQIFIASKLPVLELRDMGSCIEVMLITGLNKNFMLYEVISILEEEGAEVVSASFSTVGDKIFHTVHAQVKISRVGIESSRVHQRLRELIAPLESWDYLA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00375 190 Coils Coil 61 81 - -
Bva05g00375 190 Gene3D - 1 93 IPR036638 GO:0046983
Bva05g00375 190 SMART finulus 15 70 IPR011598 GO:0046983
Bva05g00375 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 64 IPR011598 GO:0046983
Bva05g00375 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 80 IPR036638 GO:0046983
Bva05g00375 190 Pfam Helix-loop-helix DNA-binding domain 14 64 IPR011598 GO:0046983
Bva05g00375 190 PANTHER TRANSCRIPTION FACTOR BHLH162 6 180 - -
Bva05g00375 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 180 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00375 Bva-Chr5 1866598 1868004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00375 4 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.054 6.30e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g00375 HLH 4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00375 - - gmx:100811485 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00375 05 1866598 1868004 Bva06g01341 06 10014127 10015339 BWGD
Bva06g01341 06 10014127 10015339 Bva05g00375 05 1866598 1868004 ECH
Bva05g00375 05 1866598 1868004 Bva05g00375 05 1866598 1868004 ECH