Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00374 ATGAGAGGTGCCGATTTTAAGTGGTACGATGGCTTCTTCTTGTCGATGCTGGCCACCAGCGTAGTTATAGTCGCAATTAATTGGAAGCGGTACCGTTCTTGTACATACCCCTTGCACATATGGATTATGGTTGACTACACtgttgtgtttatttttcgACTGTTGATGTTCGTTGATAATGGACTTGCTGCTGGGATGGGATTAGATTTTGGCTGGCAACAGAGATATGCTCGTTTCTGTGGGAGATTAGTGGTTCTTTCAATCCTTGCATTGCTACTCTATCCATTTCTTTGGGCTTGGACTATTATCGGTACCCTGTGGTACAGTAGTGCCAACACCTGTTTGCCTGAAAAGGGTCAGAAATGGGGATTCCTCATCTGGTTGCTCTTTAGCTACTGTGGACTTCTTTGCATTGCTTGCATGTCACTAGGGAAGTGGTTGACACGAAGACAGGCACACTTATTACGTGCTCAACAGGGTATTCCTATATCTGAATATGGGGTTCTGGTTGATATGATCCGAGTGCCTGATTGGGCATTTGAGGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCTGGACTTTACTTAACTCCTGCCCAGAGGGAAGCAGTGGAAGCATTAATTCAGGAACTCCCGAAATTCAGGTTGAAGGCTGTTCCAACCGACTGCAGTGAATGCCCAATCTGTTTGGAAGAGTTCCATGTCGGGAATGAGGTTCGTGGCCTGCCTTGTGCTCACAATTTTCACGTTGAATGCATTGATGAATGGCTTCGACTGAATGTGAAATGTCCTCGGTGCCGTTGCTCGGTATTTCCAAATCTGGACCTTAGTGCTTTGTCCAATCTCCGCCATGATTCAGAACGATCCTCTGCCAGCGTTGTTACAGCAACAAGATATGTGAGAGGCCAACCTTCTAGTCAGAGTTATCTGTTGAGATTGCAGGGCCTTCTTCGTCCAGTTCGTACTGAGATTGCAGGGCCAGGTGGTGACACAGATAATGCTCTGGAAAATGCCGAGAATGGAGTTGTACCAGTGGTGACTCTTAATGCATCGACTAGAGAGGAGGTCCCTTCGGTTGAACGCATTCCTGTCAGTCATTCCAATGcacaaaatta 1136 0.4604 MRGADFKWYDGFFLSMLATSVVIVAINWKRYRSCTYPLHIWIMVDYTVVFIFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRLVVLSILALLLYPFLWAWTIIGTLWYSSANTCLPEKGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPISEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRHDSERSSASVVTATRYVRGQPSSQSYLLRLQGLLRPVRTEIAGPGGDTDNALENAENGVVPVVTLNASTREEVPSVERIPVSHSNAQN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00374 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 279 IPR013083 -
Bva05g00374 378 SUPERFAMILY RING/U-box 215 282 - -
Bva05g00374 378 SMART ring_2 233 273 IPR001841 -
Bva05g00374 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 - -
Bva05g00374 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842|GO:0010182
Bva05g00374 378 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Bva05g00374 378 Pfam Ring finger domain 232 274 IPR001841 -
Bva05g00374 378 CDD RING-H2_RNF111_like 232 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00374 Bva-Chr5 1860416 1864039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00374 56 358 C3H Transcription Factor Family AT3G47990 74.510 1.09e-163 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00374 K16284 - gmx:100812016 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00374 05 1860416 1864039 Bva06g01344 06 10026221 10030015 BWGD
Bva05g00374 05 1860416 1864039 Bva05g00374 05 1860416 1864039 ECH