Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00355 ATGGAGAAGCTTTACGGTTTCCACTGCACCGGCGATTCCTCAATGGCTCTACCATCACCTCCAACCACTGATGACCACACCATTAATCCATTAAACTGGACACCAGTTTCTGGACCCAACCAAttggcttcttcttcttcgtctAATATTGCTGTTGCGACATCGCCAGCGGTGGCTGAGGCTGAGGTTAGCTTGGAGTTTCAAGAGCAAGAGCAGAATCACCTATCTGAAACACTTGCCGCTAAAATAGCTTCTCATCCTTTGTATCCTAAGCTCCTCGATGCCTATATTGATTTGCACAAGGTGGGAGCTCCGCCGGAGATGGTGGaactattaaaagaaatcgGAGACGAGAGTAGCGGTTTCTGTCAGGAACCTACTTGCTTGAGTGCTGATCCCGAGCTTGACAATTTCATGGAAATGTATTACGATCTATTGGTGAAGTTTAAATCGGACCTGTCAAAGCCTTTTGACGAGGCAACCGCTTTTCTCAACGACATGGAAAAACAGCTCAACTACCTCTGTACCGCAGACAACATTCCTGATATTGAATCTACAATATCATCTGGAGAGGATTTTAGTAAGGAAGATAAAGATGCGAACGCGTGCAAGAGGGTATACGAAGATAGAGAACTCAAGGATAAGCTTCTACGTAGATATAGTGGCTATATAAGCGGCCTAAAACATGAGTTctccaaaaagaagaagcaagaaaagCTACCAAAAGAGGCAACACAAATCTTACTTGCGTGGTGGAATATTCACTTCAAATGGCCATACCCAACGGAAGCAGACAAGGTAGCCCTAGCTGAATGGACAGGTCTAGATCAGAAGCAGATAAACAATTGGTTTATAAACCAAAGAAAGCGCCATTGGAAACCAACAGAGGAGATGCAAGCTGCTGTCTTAGAAGGTCTCTATGGACCTTTCTACACAAGTGACTA 944 0.4195 MEKLYGFHCTGDSSMALPSPPTTDDHTINPLNWTPVSGPNQLASSSSSNIAVATSPAVAEAEVSLEFQEQEQNHLSETLAAKIASHPLYPKLLDAYIDLHKVGAPPEMVELLKEIGDESSGFCQEPTCLSADPELDNFMEMYYDLLVKFKSDLSKPFDEATAFLNDMEKQLNYLCTADNIPDIESTISSGEDFSKEDKDANACKRVYEDRELKDKLLRRYSGYISGLKHEFSKKKKQEKLPKEATQILLAWWNIHFKWPYPTEADKVALAEWTGLDQKQINNWFINQRKRHWKPTEEMQAAVLEGLYGPFYTSD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00355 314 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 313 - -
Bva05g00355 314 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Bva05g00355 314 Pfam Homeobox KN domain 251 290 IPR008422 GO:0003677|GO:0006355
Bva05g00355 314 ProSitePatterns 'Homeobox' domain signature. 269 292 IPR017970 GO:0000981|GO:0006355
Bva05g00355 314 SUPERFAMILY Homeodomain-like 233 302 IPR009057 -
Bva05g00355 314 CDD homeodomain 243 294 IPR001356 GO:0003677
Bva05g00355 314 Pfam KNOX2 domain 129 175 IPR005541 GO:0003677|GO:0005634
Bva05g00355 314 ProSiteProfiles 'Homeobox' domain profile. 231 294 IPR001356 GO:0003677
Bva05g00355 314 SMART HOX_1 233 298 IPR001356 GO:0003677
Bva05g00355 314 Coils Coil 58 78 - -
Bva05g00355 314 Gene3D - 228 302 - -
Bva05g00355 314 ProSiteProfiles ELK domain profile. 211 231 IPR005539 GO:0003677
Bva05g00355 314 Pfam KNOX1 domain 81 119 IPR005540 GO:0003677|GO:0005634
Bva05g00355 314 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 25 313 - -
Bva05g00355 314 Pfam ELK domain 211 232 IPR005539 GO:0003677
Bva05g00355 314 SMART KNOX2_2 125 176 IPR005541 GO:0003677|GO:0005634
Bva05g00355 314 SMART ELK_2 211 232 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00355 Bva-Chr5 1758420 1763187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00355 1 312 Homeobox Transcription Factor Family AT1G23380 49.096 7.03e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva05g00355 KNOX2 5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00355 - - aprc:113874840 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00355 05 1758420 1763187 Bva05g00355 05 1758420 1763187 ECH