Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00338 ATGGCATCATCCAGCTCTTACAATTCTCCCTGTGCAGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGTTGCATCTTTGCGCCTTACTTTCCACCTGAAGAGCCCCAAAAATTTTCCAACGTCCACAAAATTTTTGGTGCTAGCAATGTGACTAAGCTCCTGAATGAACTCCTCCCTCACCAGAGAGAGGATGCAGTGAATTCCCTTGCCTATGAAGCAGAGGCCCGTGTCAGAGATCCAGTTTATGGCTGTGTCGGTGCCATCTCTTTCCTCCAAAGACAGGTTCAGAGGCTCCAGAAAGAGCTTGATGCTGCTAATGCTGATCTGATCCGTTATGCCTGCAATGATATCCCATCTGCATCTCTGCCTGTACCACAACCAATAACTTCAGTTCAACAAATTCCCCATAGACAAAGGTCTATGGAGTTTGGTGGAAGAATTGGTAATGAAGGAGGTGGGTTTTATCGTCAAACTCCTACCACTTATGTTCTTCCCTATTCTCTTCCATGGGCTGATACCTCTCCAGATGATATCAATGagggaggaggaggaggaggtaATTTGTG 569 0.4429 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFSNVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNDIPSASLPVPQPITSVQQIPHRQRSMEFGGRIGNEGGGFYRQTPTTYVLPYSLPWADTSPDDINEGGGGGGNL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00338 189 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Bva05g00338 189 Coils Coil 89 116 - -
Bva05g00338 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Bva05g00338 189 PANTHER ELONGATED PETIOLULE 1 1 186 - -
Bva05g00338 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00338 Bva-Chr5 1658504 1660658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00338 1 136 AS2 family AT5G63090 79.167 6.52e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva05g00338 LOB 5.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00338 - - pvy:116142270 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00338 05 1658504 1660658 Bva06g01402 06 10368870 10369445 BWGD
Bva06g01402 06 10368870 10369445 Bva05g00338 05 1658504 1660658 ECH
Bva05g00338 05 1658504 1660658 Bva05g00338 05 1658504 1660658 ECH