LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva05g00326	ATGAGTGCTCCCATGGAGGTCACCCTGCAAGATCCCCCAAACGACGAAATCTCCCTACAAAATGGCGTTGAACTCCAATTCACTAATCCATCTCCTTTGATTTCTGAAGAGAAAGTACTCGTCTCTGTTGAAGTATGCCTAAAACCTTCGAGTACAGCTCGAATCGAGGATGTTCGTTCAGCCGTCGAGAGGATGCTTGAGAAGAGGAGTTTGAGCTATAATGATGGACCCATTCCTGTGCCTCTTGATGATGCCTTTCTTGCAGAAAACGTGCAAAGAATCTCTATTTGTGATACAGATGAATGGGCAAACAACCATAACGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTGCAAGTCTTCCAGCTTAGTGAAGAAGGACCATGCGAGGATGTAAGTGCTGATGGTCAACCTTCCAGCTTCAATGAATGGGTTCTTCCCGCAAAAGAATTTGATGGCATGTGGGAAAGCTTGATATATGAATCTGGTCTCAAACAAAGGTTGTTACGTTACGCAGCGAGTGCTTTGCTCTTTACTGAAAAGGGCGTTGATCCATTTCTTGTTTCATGGAACCGTATCGTTCTTTTACATGGACCCCCTGGGACTGGAAAAACGTCCTTATGTAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTCCAGATACCCACAGTGCCTGCTGGTTGAAGTTAATGCACATTCTCTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAGCTATtccaaaaaattcaagaaatggtagaggaagaaaacaatctggtatttgttttaattgATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCGTTATCTGGTGCTGAACCTTCGGATTCTATACGGGTCGTGAATGCATTACTAACTCAGATAGACAAGTTGAAATCGTCGCCAAATGTTATGATTCTAACTACATCGAATATAACCGCTGCTATTGATATTGCATTTGTTGATCGAGCTGACATCAAAGCATACGTTGGCCCTCCGACTCTTCAAGCTCGCTATGAAATTTTAAGGTCTTGCTTGCAGGAACTGATACGAACACAGATCTTATTAAGTCCACAGGATTGTCGAAATTTCATTCTTCCAAACTACGCTAGTTTAAAGGAGAGGTTGAAAGCACCGGACGTTGATGAGGCCTCAATACCAATTCAACTGTGTAAACAACTGCTTGAAACAGCAGAGGCATGCGAGGGAATGAGCGGAAGGTCTTTGAGAAAGCTTCCATTCTTGGCACATGCTTCCCTTGCGAATCCTTTTGACAGCGATCCTACAAAGTTCCTGTGTACCATGATAGAAACAGCTAAGAGGGAGCGTTCTGAGCTTCCCGACTG	1370	0.4219	MSAPMEVTLQDPPNDEISLQNGVELQFTNPSPLISEEKVLVSVEVCLKPSSTARIEDVRSAVERMLEKRSLSYNDGPIPVPLDDAFLAENVQRISICDTDEWANNHNVLLFWQVKPVVQVFQLSEEGPCEDVSADGQPSSFNEWVLPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNSRYPQCLLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGAEPSDSIRVVNALLTQIDKLKSSPNVMILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTQILLSPQDCRNFILPNYASLKERLKAPDVDEASIPIQLCKQLLETAEACEGMSGRSLRKLPFLAHASLANPFDSDPTKFLCTMIETAKRERSELPD	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva05g00326	456	ProSitePatterns	AAA-protein family signature.	312	331	IPR003960	GO:0005524\|GO:0016887
	Bva05g00326	456	Gene3D	-	137	357	IPR027417	-
	Bva05g00326	456	PANTHER	PACHYTENE CHECKPOINT PROTEIN 2	34	453	IPR044539	-
	Bva05g00326	456	Pfam	ATPase family associated with various cellular activities (AAA)	194	339	IPR003959	GO:0005524\|GO:0016887
	Bva05g00326	456	PRINTS	ATP-dependent Clp protease ATP-binding subunit signature	308	322	IPR001270	GO:0005524
	Bva05g00326	456	PRINTS	ATP-dependent Clp protease ATP-binding subunit signature	194	212	IPR001270	GO:0005524
	Bva05g00326	456	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	154	424	IPR027417	-
	Bva05g00326	456	SMART	AAA_5	190	342	IPR003593	-
	Bva05g00326	456	CDD	AAA	192	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva05g00326	Bva-Chr5	1582100	1588732	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva05g00326	130	357	Calmodulin-binding Proteins	AT3G56690	29.614	4.01e-17	82.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva05g00326	K22399		-	jre:109005545	733.021

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva05g00326	05	1582100	1588732	Bva05g00326	05	1582100	1588732	ECH