Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00324 ATGGCAATTTCATCAGCGGCAACTACGTCAAAGCTCATATACCCACATGCCTCTTCATCCTCATCTTCCTCCTCTCCCGTTCCCACCTCTATTTGTGTATCTTGCTCTTCCACCACCACCAAGCACAAGCTAGCAACACCCACAAGCCACCTCTCCTCTTCCTTCATTAACCCCTCCACAATTCTCCACCTTTCACCCTCTACTTCCACCAGCACCCCCCGCCAACGCTCTTTCACAATCCGAGCTGCTCGTGGTAAGTTTGAGAGGAAGAAGCCCCATGTAAATATCGGCACAATCGGCCATGTCGACCACGGCAAGACTACTCTTACTGCTGCTCTTACCATGGCCTTGGCGTCATTGGGCAACAGTGCTCCCAAGAAATACGACGAAATTGACGCTGCCCCTGAAGAGCGAGCTCGTGGAATCACCATTAACACTGCCACTGTTGAGTATGAGACTGAGAATCGCCATTATGCCCATGTCGACTGCCCTGGCCACGCCGATTATGTCAAGAACATGATTACCGGTGCTGCCCAGATGGACGGCGCAATTCTTGTTGTTTCTGGTGCTGACGGTCCAATGCCTCAGACTAAAGAGCATATCCTTTTGGCCAAGCAAGTTGGTGTGCCCAATATGGTTGTGTTTCTCAACAAACAAGACCAGGTTGATGACGAGGAACTTCTACAGCTTGTCGAATTGGAGGTTCGTGAGCTACTTTCTTCTTATGAATTCCCGGGAGATGATATCCCCATTGTTTCCGGTTCTGCTCTGTTAGCTTTGGAAGCATTGATGGCTAATCCTGCCATTAAACGTGGTGATAACCAGTGGGTGGATAAGATTTATGAACTTATGGATTCTGTGGATAGCTATATTCCCATTCCCCAGCGCCAAACTGATCTTCCATTTTTACTTGCCGTTGAAGATGTGTTCTCAATTACTGGTCGTGGAACGGTGGCCACTGGTCGTGTTGAGAGAGGTACAGTTAGAGTTGGAGAGACCGTAGATCTTGTTGGTTTGAGGGAAACTAGAAACACTACGGTGACTGGGGTAGAAATGTTTCAGAAGATTCTTGATGAGGCCTTGGCTGGGGATAACGTCGGATTGTTGCTCAGAGGTATCCAGAAGGCTGATATACAGAGAGGGATGGTTTTGGCTAAGCCAGGCACCATTACCCCACACACCAAGTTTACTGCAATTGTGTATGTGctaaagaaggaagaaggagGTAGGCATTCACCATTTTTTGCTGGGTACAGGCCACAGTTTTACATGAGGACGACAGATGTGACTGGAAGAGTGTCCTCAATTATGAATGACAAGGATGAGGAGTCCAAGATGGTCATGCCTGGAGACCGTGTTAAGATGGTTGTTGAACTTATTGTCCCTGTTGCTTGTGAGCAAGGAATGAGGTTTGCTATTAGAGAAGGGGGCAAGACTGTTGGCGCTGGTGTTATCCAGTCAATCATTGAGTA 1472 0.4749 MAISSAATTSKLIYPHASSSSSSSSPVPTSICVSCSSTTTKHKLATPTSHLSSSFINPSTILHLSPSTSTSTPRQRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIVSGSALLALEALMANPAIKRGDNQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGTITPHTKFTAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00324 490 PRINTS GTP-binding elongation factor signature 212 221 IPR000795 GO:0003924|GO:0005525
Bva05g00324 490 PRINTS GTP-binding elongation factor signature 139 147 IPR000795 GO:0003924|GO:0005525
Bva05g00324 490 PRINTS GTP-binding elongation factor signature 159 169 IPR000795 GO:0003924|GO:0005525
Bva05g00324 490 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
Bva05g00324 490 PRINTS GTP-binding elongation factor signature 175 186 IPR000795 GO:0003924|GO:0005525
Bva05g00324 490 PANTHER ELONGATION FACTOR TU 31 490 - -
Bva05g00324 490 Hamap Elongation factor Tu [tuf]. 82 490 IPR004541 GO:0003746|GO:0005525|GO:0006414
Bva05g00324 490 Pfam Elongation factor Tu C-terminal domain 389 488 IPR004160 -
Bva05g00324 490 PANTHER ELONGATION FACTOR TU-RELATED 31 490 - -
Bva05g00324 490 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 295 IPR000795 GO:0003924|GO:0005525
Bva05g00324 490 Pfam Elongation factor Tu GTP binding domain 91 292 IPR000795 GO:0003924|GO:0005525
Bva05g00324 490 Pfam Elongation factor Tu domain 2 316 384 IPR004161 GO:0005525
Bva05g00324 490 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Bva05g00324 490 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 389 489 IPR009001 -
Bva05g00324 490 TIGRFAM small_GTP: small GTP-binding protein domain 94 226 IPR005225 GO:0005525
Bva05g00324 490 SUPERFAMILY Translation proteins 296 392 IPR009000 -
Bva05g00324 490 CDD EF_Tu 92 294 IPR041709 -
Bva05g00324 490 TIGRFAM EF-Tu: translation elongation factor Tu 83 490 IPR004541 GO:0003746|GO:0005525|GO:0006414
Bva05g00324 490 CDD EFTU_II 302 388 IPR033720 -
Bva05g00324 490 Gene3D Translation factors 297 425 - -
Bva05g00324 490 Gene3D Translation factors 429 489 - -
Bva05g00324 490 CDD EFTU_III 391 485 - -
Bva05g00324 490 Gene3D - 83 294 IPR027417 -
Bva05g00324 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 317 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00324 Bva-Chr5 1571247 1573050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00324 89 488 Eukaryotic Initiation Factors Gene Family AT5G60390 30.425 6.82e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00324 K02358 - gmx:100793431 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00324 05 1571247 1573050 Bva06g01424 06 10471892 10473857 BWGD
Bva05g00324 05 1571247 1573050 Bva05g00324 05 1571247 1573050 ECH