Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00313 ATGGAGATGGAGCGGGTGTTTGAATTTCCTCATACTCACATGGATCGGCGCCCAAGAAAGAGGGCGCGTTTGGGATGGGACATACCTGAAGCTCCTAAGGCTCAGGTAGGATTATTATGTGGACAAGAGGTTGGAAATTTTTCAAGCTATGCACCTACGAGGGGCCCCTCTGAGCATACCACTAGTTCTCTGTATGTTAAGGGAGTTGCTCGAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAAAATGGGTGAAGGGACTTTTGGTCAGGTCTTGGAATGCTGGgacagagaaaagaaggaaatggtTGCCATAAAAATTGTCCGTGGAATAAAGAAATATCGTGAGGCAGCAATGATAGAAATTGAGATGCTGGAACAGCTTGGGAGACATGATAAAGGTGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAGTCATATATGTATTGTTTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGCTCATTTCCCATTGATCTTGTTCGTGAGATTGGCAGACAACTATTGGAATGTGTAGCATTCATGCGTGATTTGCACATGATCCATACTGACTTGAAGCCGGAAAACATACTTCTAGTTTCACCTGAGTATGTTAAGGTTCCCGATTACAAGAGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGGGTTCCAAAATCAAGTGCGATCAAGGTTATTGATTTTGGCAGCACAACGTATGAGAGAGAAGATCAGAATTACATTGTATCAACACGTCATTATCGGGCACCAGAAGTTATCCTTGGACTTGGGTGGAGTTATCCATGTGATATATGGAGTGTGGGTTGCATTTTAGTGGAGTTGTGCACGGGTGAAGCTTTGTTTCAAACTCATGAGAATTTGGAGCATCTTGCTATGATGGAGAGGGTCCTTGGGCCATTGCCTCAGCACATGTTGAAAAAAGTAGACCGACACTCGGAGAAGTATGTGAGAAGGGGAAGGTTGGACTGGCCGGAGGGTGCAACCTCGAGGGAGAGTATTAAAGCTGTATCAAAGCTTCATCGTGTACCGAATCTGATAATGCAGCATGTGGATCATTCAGCCGGGGATCTCATACATGTGTTGCAGGGATTGCTCAAGTATGACCCTTCTGAAAGGTTGACAGCCAGGGAAGCTCTTAGACATCCCTTCTTTGCAAAGGATCACCACCTTAGGAGATG 1295 0.4363 MEMERVFEFPHTHMDRRPRKRARLGWDIPEAPKAQVGLLCGQEVGNFSSYAPTRGPSEHTTSSLYVKGVARNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDREKKEMVAIKIVRGIKKYREAAMIEIEMLEQLGRHDKGGNRCVQIRNWFDYRSHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREIGRQLLECVAFMRDLHMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKKVDRHSEKYVRRGRLDWPEGATSRESIKAVSKLHRVPNLIMQHVDHSAGDLIHVLQGLLKYDPSERLTAREALRHPFFAKDHHLRR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00313 431 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00313 431 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00313 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Bva05g00313 431 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 430 - -
Bva05g00313 431 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Bva05g00313 431 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Bva05g00313 431 CDD PKc_CLK 85 423 - -
Bva05g00313 431 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00313 431 SUPERFAMILY Protein kinase-like (PK-like) 85 427 IPR011009 -
Bva05g00313 431 PANTHER KINASE AFC1 1 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00313 Bva-Chr5 1531876 1535521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00313 103 423 Core Cell Cycle Gene Families AT1G76540 26.866 6.66e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Bva05g00313 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00313 K08287 - gmx:100804452 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00313 05 1531876 1535521 Bva05g00313 05 1531876 1535521 ECH