Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00308 ATGTCCATCACAACCATACCTGCGGTTAAGACCCTTGCAATGGTAGAATCACGCCTACTCTCTTTGCCCTCATTCTGTTACggcaaaattaaatatccatGTCTCTCAACTCCTTCCAAACCCGTTAAGCTCCAAGCCCTTCGCTCTAATTCTTCactatttttatcatctttgtCTCTCAGCAGGAAAACCCACCATTCCTCCATTGTCACATTTGTAGCGCAGACATCGGATTGGGGGGAAGACAACATACTCgctgttgaagaagaagaagcagagcAAGATGAATCTACATGGGAAAATCGGGATGGAGCCGAAGCTGGTCTTTCGGATTGGGAGTCTGAGGGTGGAGATGCCGGGATTGAGGGTAGCCAGAGCGAAGGAGAGAGCGGTGAAGATGGGGTTTTTGAGGAGAGGGAAGGGGAATTTGTAGAACCACCTGAAGATGCAAAACTATTTGTTGGCAACTTGCCTTACGATGTTGATAGTCAGAAATTGGCCATGCTTTTTGAGCAGGCCGGAACGGTGGAAATTGCCGAGGTAATTTATAATAGAGAAACTGATCAAAGTCGTGGGTTCGGATTTGTAACCATGAGTACAGTTGAAGAAGCCGATAATGCAGTCGAGAAGTTCAACCGCTATGATTTAGATGGGAGACTGCTGAATGTTAATAAGGCTGCTCCAAGAGGATCACGTCCTGAACGCCCACCTCGTACCTTTGAACCTGCATTCAGAGTCTATGCTGGGAACTTGCCGTGGGATATTGACAATGCTCGCCTGGAGCAAGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCTCGGATTGTGTATGACACAGAAACTGGTCGATCTCGTGGTTTTGGCTTTGTTACAATGACCAGCGAGACTGAAATGAATGATGCCATTGCTGCTCTCGATGGTCAGAGTTTGGACGGGAGGACAATCAGAGTGAATGTTGCCGAGCAAAGATCCAGGCGTAGCTCCTTTTG 989 0.4479 MSITTIPAVKTLAMVESRLLSLPSFCYGKIKYPCLSTPSKPVKLQALRSNSSLFLSSLSLSRKTHHSSIVTFVAQTSDWGEDNILAVEEEEAEQDESTWENRDGAEAGLSDWESEGGDAGIEGSQSEGESGEDGVFEEREGEFVEPPEDAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEADNAVEKFNRYDLDGRLLNVNKAAPRGSRPERPPRTFEPAFRVYAGNLPWDIDNARLEQVFSEHGKVVSARIVYDTETGRSRGFGFVTMTSETEMNDAIAALDGQSLDGRTIRVNVAEQRSRRSSF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00308 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 228 IPR000504 GO:0003723
Bva05g00308 329 PANTHER RIBONUCLEOPROTEIN 1 329 - -
Bva05g00308 329 CDD RRM_HP0827_like 151 228 - -
Bva05g00308 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 322 IPR000504 GO:0003723
Bva05g00308 329 SMART rrm1_1 151 224 IPR000504 GO:0003723
Bva05g00308 329 SMART rrm1_1 245 318 IPR000504 GO:0003723
Bva05g00308 329 Gene3D - 234 328 IPR012677 -
Bva05g00308 329 Gene3D - 81 233 IPR012677 -
Bva05g00308 329 CDD RRM_HP0827_like 245 321 - -
Bva05g00308 329 SUPERFAMILY RNA-binding domain, RBD 236 327 IPR035979 GO:0003676
Bva05g00308 329 PANTHER OS02G0815200 PROTEIN 1 329 - -
Bva05g00308 329 SUPERFAMILY RNA-binding domain, RBD 146 238 IPR035979 GO:0003676
Bva05g00308 329 MobiDBLite consensus disorder prediction 89 142 - -
Bva05g00308 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 221 IPR000504 GO:0003723
Bva05g00308 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 316 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00308 Bva-Chr5 1506242 1508840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00308 148 326 Eukaryotic Initiation Factors Gene Family AT3G16380 34.043 1.93e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00308 - - hbr:110672501 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00308 05 1506242 1508840 Bva06g01437 06 10522928 10524993 BWGD
Bva06g01437 06 10522928 10524993 Bva05g00308 05 1506242 1508840 ECH
Bva05g00308 05 1506242 1508840 Bva05g00308 05 1506242 1508840 ECH