Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00296 ATGACAATCCACTCTCTCCCTTTACTCTTCTTGCTCTTCTCTCTTGTCGCACCAACCCTAATTTCCTCTTCGGCAGTTCAGGACCCAGAACTGGTTGTCCAACAAGTTAACAGgAAAATCAATGCCTCCATTGCCAGAAGGAACTTGGGTTACCTTTCGTGTGGGAGTGGTAACCCCATTGACGATTGCTGGCGGTGTGACCCCAGTTGGGAGAAGAACCGTCAAAGGCTAGCTGACTGTGCAATTGGGTTTGGGAAGAATGCCATTGGAGGAAGAGATGGCAAGATTTACGTGGTGACTGACTCCGGCGACGATGATCCGGTCAACCCCAAGCCGGGGACTCTCCGACATGCGGTCATCCAAGATGAGCCATTGTGGATCATATTCGCAAGAGACATGGTGATTCAGTTGAAGGAAGAGCTCATCATGAACTCCTTCAAGACCATTGATGGTAGAGGAGCAAGTGTGCACATTGCCGGTGGTCCATGCATTACCATACAGTACGTGACTAATATTATAATCCATGGCATACACATACATGACTGCAAGCAAGGAGGGAATGCTATGGTGAGGGACTCCCCGCGGCATTACGGGTGGAGAACACTATCGGACGGTGATGGCGTGTCCATCTTTGGAGGAAGCCACGTATGGGTAGACCATTGCTCTTTGTCCAATTGCCGGGATGGCTTGATTGATGCCATTCATGGGTCCACGGCTATTACGCTCTCCAACAATTACATGACACATCATGACAAGGTCATGCTCTTGGGTCACAGCGACTCCTATGCACAGGACAAGAACATGCAAATCACAATAGCCTTTAACCACTTTGGAGAAGGGCTTGTTCAGAGAATGCCAAGATGTAGGCTGGGATATTTCCATGTGGTGAACAATGACTACACCCATTGGGAAATGTATGCCATTGGAGGAAGTGCGAACCCAACTATCAATAGCCAAGGCAACAGATTTGCCGCACCCGATGACAGATTCAGCAAagagGTGACAAAGCACGAAGATGCACCAGAGAGCGAATGGAAGAATTGGAACTGGAGGTCAGAAGGGGACTTGCTGGTAAACGGTGCGTTTTTCACTGCGTCAGGGGCTGGAGCATCTTCTAGCTATGCAAGGGCTTCTAGCCTCAGTGCAAGGCCATCTTCGCTTGTCGGTTCGATAACGACCACTGCCGGTGCACTTAACTGTAGGAAAGGTTCTCGTTGCTG 1220 0.4943 MTIHSLPLLFLLFSLVAPTLISSSAVQDPELVVQQVNRKINASIARRNLGYLSCGSGNPIDDCWRCDPSWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPRHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHDKVMLLGHSDSYAQDKNMQITIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDDRFSKEVTKHEDAPESEWKNWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTTAGALNCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00296 406 PANTHER PECTATE LYASE 18-RELATED 4 403 IPR045032 GO:0030570
Bva05g00296 406 Pfam Pectate lyase 142 323 IPR002022 -
Bva05g00296 406 Gene3D - 57 399 IPR012334 -
Bva05g00296 406 PANTHER PECTATE LYASE 4 403 - -
Bva05g00296 406 SUPERFAMILY Pectin lyase-like 37 401 IPR011050 -
Bva05g00296 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Bva05g00296 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Bva05g00296 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Bva05g00296 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Bva05g00296 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Bva05g00296 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Bva05g00296 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Bva05g00296 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Bva05g00296 406 SMART amb_all 132 329 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00296 Bva-Chr5 1454127 1456213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00296 5 406 Polysaccharide Lyase AT5G63180 81.931 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00296 K01728 - gmx:100101868 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00296 05 1454127 1456213 Bva06g01449 06 10567817 10569858 BWGD
Bva06g01449 06 10567817 10569858 Bva05g00296 05 1454127 1456213 ECH
Bva05g00296 05 1454127 1456213 Bva05g00296 05 1454127 1456213 ECH