Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00294 atgttccgGACAATGATGGATGGGCGGCGGCATTCAGTTGATTTTCCTATTTCTAAAACTCTCGTAGCACTGAGGAGAGTGAGGTCATTGAGGGATCCAACAACTAATTCTATGAGCAAACTAGCTTCTTTAATTGATAATGTTCACTGGGAAAACAGTTCGGGTAATGGGATTTCTCTGCGGTTCTTGGATGCTTCTCATACTTGCGGTTCTGATGATAATGTCACTTTAAGATCAAGGAATTTAGGTGTAAAGGGATTAAGAGAGCAGGACGGTactgattttgaatttaattctGGCCTGTTGAACTCTAAGCTGAATTCTTTTGGGATCACTTGTCATGAAAGGCAACAGGATGATGAAACGGTTTACTCTAATTTGAATCATGGAGGTCTTTCAGGAAAAAAGTCACCAAATGAAAGCTGTTGTAGTAACCGTAGGGGTGAGGGATTGGATTGGGCTTGCATCATGCTTCCCAGTGATAATTTAAACAGTGGAGATTCATGTTATGAAGCAACTGTTGGGTCATCACAATTAGGGAGGATAGAACACTTGAAGTTGACTAGAAAGTCTCTATGCAAAAATCGAGGGAAACCATCTGAGGGTGATGCTGCAAATATAAATCAAGACGTGGATGCTGTAGATAACATTCACCAGGGATGTGGAATAAGCTGTTGTTGGTCGAGATCACCAAGGTTTAGAGAATCAGGTCTTTATTCTGGCATAGAAGACCGTCCTTTGATATCTCAGCAcatggatgattttgatatttatggAAATATAAGCATGAGAAACATTTCTGGtgaaattagtcaaaatttgGAAACTCCTAAAAGTTTAACTTTGAAGTTCAGGCCAAAATCCTTTAGAGATTTGGTGGGACAAAACGCGGCAGCGAAGTCTCTTTTAGGAGCTATCACTATGGGAAGAATAATGTCATTCTATCTCTTTCATGGTCCCCGTGGTACAGGCAAGACCTCTGCCTCCAGGATTTTTGCTGCTGCACTGAATTGCCACTCCCTTGAGGAGCAAAGGCCATGTGGTCTGTGCAGAGAAtgtcttttattcttttctggAAGAAATAAAGATGTTAATCAAGTGGATTCTGTGAGAATCAATCGAACAGACAAGCTTAAGTCCCTTGTTAAGAATGCTAGCATTCCCCCAGTTTCCTCACGTTTCAaggtttttattattgatgagTGCCAGTCGTTGCATGGGGAAACGTGGGCAAGTCTTTTGAATATTCTAGAGAATCTTCCTCAGtatgttgtttttgtgatGATCACTCCTGATTTGGATAAGCTTCCTCGTAGTGCAATTTCCCGGGCACAGAGGTATCACTttccaaagataaaagatGCTGACATTGCAAGCAGATTGGAGCAAATTTGTGTCCAAGAATGTCTCGATTTTGAACTGGATGCTTTGGACTTTGTTGCTGCTAAATCCTGCGGCTCACTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGgtaaaaaaatcacaatttcCTTAGTCTACGAGCTTACTGGGGTTGTTTCTGATGATGAATTGCTTGATTTGCTGGATCTGGCATTGTCTTCTGATATTTCAAATACAGTTATAAGAGCTCGGGAGCTGATGAAATCAAGGATAGATCCTTTACAACTTATATCCCAGCTGACAAATCTCATTATGGACATCCTTGCTGGTAAAGGTCACGATGGTGTTTCTGAAGCCAAAAGAAGGTTTTCTAGTAGACATCACTCTGAAACAGACCTGCAGAAACTAAGTCATGCATTGAGATTACTTTCTGAAACTGAGAAGCAATTAAAAACTTCAAAGAATCAAACAACATGGTTTACGGTAGCCCTCCTTCAGCTAAGTTCTGTTGAGCATTCTTCTGTGGATGCAAATAATACAAAGTTGTGTTTGAGAGATGCAGGTGCTGATTTGTGCAGCACATCATCTAAAGGGGAGAGCTTGAAGCATCTTACTACAGGCTTGTGTGACGACAAGTCATATAGATTAGGAGTTCAGGAGGATCACAAAGGAACATTGGATTCCATATGGTATAAAGCTACAGAGTTATGTAAATCTAATGGGCTTAAGATGTTTCTCAGGAAAAGGGGGAAGTTGTCTTCACTTTGTGTTAGTCACGGTCTTGCAATTGCTGAGTTGGAGTTCCACCGTCGTGACTACGTATCTAAAGCTGAGAAGTCATGGAAACTGATTGCAAATTGCCTGCAACTCTTATTAGGTTGTAACATTGAGCTTAGGATCAATCTTGTATCTATCCATTCTGATTCCAAGAATGCCAAACTGAAGAAGAGGTCATCCTTCAGTTTCTTTAGTTGTTCCCGCAGAATAAATCAGAAATCATTGTCGTCAAATGAACGAGGAAGTGACTCAGACTTCGCTGAAAAACCCATGGTGAAGGATGGAACTCAGACTTATCGGGTGCTACCCATTGAGTGCTATAAAGGGATGGATGTTGAAACAAGTTTAAGAAATAGTGAAGGGAATCTGTTGAGTTCGGGGGAAAGATTGTTGAGTAGGTCATGTCAAGAGTCTCCAAGGACATGGAATGCAAGGCTTCAGCAACACTTACACAAATCGCATCTAGTGGGTTGGGTTCTTCCCTGTGCCAGTGCTAACATGTA 2654 0.3934 MFRTMMDGRRHSVDFPISKTLVALRRVRSLRDPTTNSMSKLASLIDNVHWENSSGNGISLRFLDASHTCGSDDNVTLRSRNLGVKGLREQDGTDFEFNSGLLNSKLNSFGITCHERQQDDETVYSNLNHGGLSGKKSPNESCCSNRRGEGLDWACIMLPSDNLNSGDSCYEATVGSSQLGRIEHLKLTRKSLCKNRGKPSEGDAANINQDVDAVDNIHQGCGISCCWSRSPRFRESGLYSGIEDRPLISQHMDDFDIYGNISMRNISGEISQNLETPKSLTLKFRPKSFRDLVGQNAAAKSLLGAITMGRIMSFYLFHGPRGTGKTSASRIFAAALNCHSLEEQRPCGLCRECLLFFSGRNKDVNQVDSVRINRTDKLKSLVKNASIPPVSSRFKVFIIDECQSLHGETWASLLNILENLPQYVVFVMITPDLDKLPRSAISRAQRYHFPKIKDADIASRLEQICVQECLDFELDALDFVAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGVVSDDELLDLLDLALSSDISNTVIRARELMKSRIDPLQLISQLTNLIMDILAGKGHDGVSEAKRRFSSRHHSETDLQKLSHALRLLSETEKQLKTSKNQTTWFTVALLQLSSVEHSSVDANNTKLCLRDAGADLCSTSSKGESLKHLTTGLCDDKSYRLGVQEDHKGTLDSIWYKATELCKSNGLKMFLRKRGKLSSLCVSHGLAIAELEFHRRDYVSKAEKSWKLIANCLQLLLGCNIELRINLVSIHSDSKNAKLKKRSSFSFFSCSRRINQKSLSSNERGSDSDFAEKPMVKDGTQTYRVLPIECYKGMDVETSLRNSEGNLLSSGERLLSRSCQESPRTWNARLQQHLHKSHLVGWVLPCASANM 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00294 884 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 206 852 - -
Bva05g00294 884 SUPERFAMILY post-AAA+ oligomerization domain-like 522 624 IPR008921 GO:0003677|GO:0006260
Bva05g00294 884 CDD AAA 293 443 - -
Bva05g00294 884 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 206 852 - -
Bva05g00294 884 Pfam DNA polymerase III, delta subunit 294 452 - -
Bva05g00294 884 Coils Coil 594 614 - -
Bva05g00294 884 Gene3D - 453 514 - -
Bva05g00294 884 Gene3D - 515 629 - -
Bva05g00294 884 Gene3D - 271 450 IPR027417 -
Bva05g00294 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 502 IPR027417 -
Bva05g00294 884 SMART AAA_5 311 453 IPR003593 -
Bva05g00294 884 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 279 625 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Bva05g00294 884 CDD HLD_clamp_pol_III_gamma_tau 452 515 IPR045085 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00294 Bva-Chr5 1443739 1447716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00294 274 633 Core DNA Replication Machinery Family AT1G21690 23.641 2.28e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00294 - - gmx:100819111 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00294 05 1443739 1447716 Bva06g01450 06 10577998 10581900 BWGD
Bva05g00294 05 1443739 1447716 Bva05g00294 05 1443739 1447716 ECH