Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00290 ATGAGAGCTTCGCCGGCGCCATCTATCACTTCCCCAAATGATCCAATCGGCAGCCGTCCTTCTCCAGCATCGACAGATGCGAATGGgattaattgtttttctccatttctcaCTCAGCTTCTCTCTTTGATCTCCATATTCAACCTCAGGAAGGACCCAGAATTGGGTTTTCAGTCGGCACCTTCTTCCCGTAGTCCCGATCGTGATCGTGAAACGTCAGATCTCAATCACCTGGCTGAGGCCGATGCACTTCATGGGGAGCTTCACAACAAGTTAGATTTGAAGGATAAGGAGGAGGAACCCGAGACCGAGAACAAAGATTCAGAATTTGATGATGGTATGCAAGTAAGTATTCAACAGGATGCTGACGAATCTGGTAACGGAGATGGATGGAATGAAGATAACAGCAATTGGAATGCAAATGATAGCAATAATTGGAATGAGAATGTGAACGATAGTGAGCATGACTGGGTGGCTAGTGATGTTGATGTAACTGTCCGTGATGAGGAGAAGAAGGACGATAGAAGCTGCGGTAGGCCTCACAAGTACCCGGTGAGGCCCGAAGCTGAAGATTGTGCATTCTATCTAAAGACTGGAACTTGCAAGTTTGGATTCAATTGCAAGTTTAATCACCCTGTTCGGAGGAAAAATCAGGCTGTCAAGGAAAAAGCAGGGGAAAGAGAAGAATCAGCAGAAAGGCAGGGACAGGCAGAATGCAAGTATTATCTAACGTCAGGGGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCACACAAGAGGAAAGTGTTCTGTGGCCCCAATTCTAGAGCTTAACTTTCTGGGCTTGCCTATTCGTCCGGGGGAAAAAGAGTGCCCTTATTACATGCGTAACGGTTCTTGCAAGTTTGGAGCTAACTGCAGGTTTAATCATCCTGATCCTACAGCTGTCGGAGGAAGTGATCCTCCTTCAGGATATGGTAATGGTGGGAACATTTCGTTACACGGTGCATCACAACCGTCTGTGCCCACCTGGTCTTCTCCAAGAACAGTAAATGAAGCTGCCCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGGGTTTCTCCCCAGAGTTCTGAATGGAATGGATATCAGGCACCTGTCTATCTGTCTGAGAGGAGTATGCATCCACCTTCTACATATGTCATGAACAACCCAGCCATTGAAGCAAATGTTTATATTCATCCTCAAAAGCAGATGCAAGCTGAAGAGTTTCCAGAAAGGCCTGGGGAACCTGAATGCACTTACTTCATGAAAACCGGGGAttgcaaatttaaatttaattgtaaatttcaCCATCCAAAGAATCGAATTGCAGGACCACCTCCATGTGCCCTCAGTGACAAGGGTCTTCCTTTGAGACCGGACAAGAATATCTGCTCACATTACAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAACTCCCTCAACGATGTCTGGACTTGATCAGCAATCCTCCTTCCCCAACTCTGCTAATGTAGAAGTTGATGGGCTGGCTGGAAGTCCAGGTGCAAGTGATGTGGCATTTCAGCAAAGTGTGTA 1583 0.4498 MRASPAPSITSPNDPIGSRPSPASTDANGINCFSPFLTQLLSLISIFNLRKDPELGFQSAPSSRSPDRDRETSDLNHLAEADALHGELHNKLDLKDKEEEPETENKDSEFDDGMQVSIQQDADESGNGDGWNEDNSNWNANDSNNWNENVNDSEHDWVASDVDVTVRDEEKKDDRSCGRPHKYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPVRRKNQAVKEKAGEREESAERQGQAECKYYLTSGGCKFGKACKYNHTRGKCSVAPILELNFLGLPIRPGEKECPYYMRNGSCKFGANCRFNHPDPTAVGGSDPPSGYGNGGNISLHGASQPSVPTWSSPRTVNEAAPFVPMMLSPTQGVSPQSSEWNGYQAPVYLSERSMHPPSTYVMNNPAIEANVYIHPQKQMQAEEFPERPGEPECTYFMKTGDCKFKFNCKFHHPKNRIAGPPPCALSDKGLPLRPDKNICSHYSRYGICKFGPACKFDHPTPSTMSGLDQQSSFPNSANVEVDGLAGSPGASDVAFQQSV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00290 527 Gene3D - 227 313 - -
Bva05g00290 527 Gene3D - 414 496 - -
Bva05g00290 527 MobiDBLite consensus disorder prediction 1 30 - -
Bva05g00290 527 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872
Bva05g00290 527 SUPERFAMILY CCCH zinc finger 186 214 IPR036855 GO:0046872
Bva05g00290 527 MobiDBLite consensus disorder prediction 309 342 - -
Bva05g00290 527 MobiDBLite consensus disorder prediction 324 342 - -
Bva05g00290 527 MobiDBLite consensus disorder prediction 64 102 - -
Bva05g00290 527 MobiDBLite consensus disorder prediction 112 153 - -
Bva05g00290 527 SMART c3hfinal6 415 442 IPR000571 GO:0046872
Bva05g00290 527 SMART c3hfinal6 233 260 IPR000571 GO:0046872
Bva05g00290 527 SMART c3hfinal6 186 213 IPR000571 GO:0046872
Bva05g00290 527 SMART c3hfinal6 462 488 IPR000571 GO:0046872
Bva05g00290 527 SMART c3hfinal6 279 306 IPR000571 GO:0046872
Bva05g00290 527 PANTHER PROTEIN PHOSPHATASE RELATED 45 527 - -
Bva05g00290 527 SUPERFAMILY CCCH zinc finger 459 487 IPR036855 GO:0046872
Bva05g00290 527 ProSiteProfiles Zinc finger C3H1-type profile. 461 489 IPR000571 GO:0046872
Bva05g00290 527 SUPERFAMILY CCCH zinc finger 237 262 IPR036855 GO:0046872
Bva05g00290 527 ProSiteProfiles Zinc finger C3H1-type profile. 415 443 IPR000571 GO:0046872
Bva05g00290 527 SUPERFAMILY CCCH zinc finger 281 306 IPR036855 GO:0046872
Bva05g00290 527 SUPERFAMILY CCCH zinc finger 420 444 IPR036855 GO:0046872
Bva05g00290 527 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 45 527 - -
Bva05g00290 527 MobiDBLite consensus disorder prediction 54 157 - -
Bva05g00290 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 417 442 IPR000571 GO:0046872
Bva05g00290 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 258 IPR000571 GO:0046872
Bva05g00290 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 305 IPR000571 GO:0046872
Bva05g00290 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 190 212 IPR000571 GO:0046872
Bva05g00290 527 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 464 487 IPR000571 GO:0046872
Bva05g00290 527 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Bva05g00290 527 Gene3D - 145 224 - -
Bva05g00290 527 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00290 Bva-Chr5 1413246 1418675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00290 411 504 C2H2 Transcription Factor Family AT3G02830 46.392 2.00e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva05g00290 zf-CCCH 1.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00290 - - gmx:100786894 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00290 05 1413246 1418675 Bva06g01457 06 10620691 10624903 BWGD
Bva04g00982 04 6440038 6441668 Bva05g00290 05 1413246 1418675 ECH
Bva05g00290 05 1413246 1418675 Bva05g00290 05 1413246 1418675 ECH