Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00279 ATGGCTCTTCCCCTTTATAGTTCCTCCAAGGACGATTACTGTGATGAAAATCAAGTGATTGGCCTTGATCTTCATGTTCCGGCAATAGGTTGTTATGTCTATCCTCTTTTGCCTCTTTTGGAAAGCAGTGCTTCTTCTTGGGCCTTCCCTTTTTCTGATGAAACCACAAGGGACAGCAAAAGGATAAGAAGAAGCACAAGTATCCCTGATGTCCTTAGTAGTTATTCAAGCAGTGGAAGTGGCAGCAATGGCTATAGCGGCATAAGCCGCTGCAGCAGCACCAACAGTGTGAATAGCTTGCAAAGGTTCCATTTCAGAGATCACATATCGACTTATTCACAGAGGTTTCTTGCTGCTGAAGCTATTGAAGAGGCAGCAGAAGATATGACTAATAATTCTGAGGGGACTGTAGCTGAAGAAGATGGATGTGCCGATGGGATGAGGCTGGTTCAGCTTCTAATTGCTTGTGCAGAAGCTGTGGCTTGTCGTGACAAATCACATGCTTCCCTTTTACTATCTGAACTTAGAGTCAAAGCTTTGGTGTTTGGATCCTCATTCCAGCGCGTTGCTTCCTGTTTTGTTCAAGGCCTGGCTGATCGGCTTGCTCTAACACAACCAGTTGGGGCAGTGGGAGTTATAGACCCCATGATGAATATTATGGATGCAGCCACAGAAAAAACGGAAGAAGCTTTTCAACTGGTTTATGAGATTTTCCCATACATTCAGTTTGGACACTTTGTAGCAAACTCAATAATATTGGAAGCCTTTGAGGGTAAGAGTTTTGTCCATGTGGTGGACCTGGGGATGACCCTTGGTCTTCCACATGGTCACCAATGGCGGGGACTGATCCAGAGCCTAGCTAACCGTTCTGGCCAACCAGTTCGCCGCCTTCGTATAACCGGTGTTGGCCTTTGCATTGAAAGGCTCAACATTATCGGTGAGGAACTCCAAGTTTATGCAAATAGCTtgggaattaattttgaattctcaTTGGTGCAAAAGAACCTAGAGAATCTGCATCCTGAAGACATTAAAATCAATGAAGGAGAGGTTCTAGTCATCAATAGCATCCTTCAGTTGCACTGCGTGGTTAAAGAAAGTCGTGGGGCTTTGAATTCAGTCTTGCGGatgatttatgaattttcaCCAAAAGTCCTAGTTATGGTTGAGCAGGATTCAAGCCACAATGGACCCTTTTTCCTTGGAAGGTTTATGGAAGCACTGCACTATTACTCTGCTATTTTTGACTCCTTAGATGCTATGTTGCCAAAATATGACACTAAGCGGGCGAAAATAGAGCAGTTTTTCTTCGCTGAGGAGATAAAGAACATTGTGAGCTGTGAGGGACCAGCAAGGGTGGAAAGGCATGAAAAAGTGGACCAGTGGCGCAGGAGAATGAGCAGGGCTGGGTTTCAGGCCACACCTATTAAGATGGTTGCTCAGGCCAAGCAATGGCTTCAGAAGCATACGGTTTGTGATGGCCATACCGTTGTGGAAGAGAAAGGATGCTTGGTGCTTGGTTGGAAGACAAAGCCAATAGTTGCAGCTTCTTGCTGGAAATGCTG 1565 0.4447 MTLGLPHGHQWRGLIQSLANRSGQPVRRLRITGVGLCIERLNIIGEELQVYANSLGINFEFSLVQKNLENLHPEDIKINEGEVLVINSILQLHCVVKESRGALNSVLRMIYEFSPKVLVMVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFFFAEEIKNIVSCEGPARVERHEKVDQWRRRMSRAGFQATPIKMVAQAKQWLQKHTVCDGHTVVEEKGCLVLGWKTKPIVAASCWKC 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00279 253 Pfam GRAS domain family 4 252 IPR005202 -
Bva05g00279 253 ProSiteProfiles GRAS family profile. 1 252 IPR005202 -
Bva05g00279 253 PANTHER DELLA PROTEIN RGL1-LIKE 3 252 - -
Bva05g00279 253 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 252 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00279 Bva-Chr5 1366187 1368532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00279 1 252 GRAS Transcription Factor Family AT1G66350 40.625 4.65e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bva05g00279 GRAS 4.7e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00279 - - adu:107491113 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01470 06 10701170 10702756 Bva05g00279 05 1366187 1368532 ECH
Bva05g00279 05 1366187 1368532 Bva05g00279 05 1366187 1368532 ECH