Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00234 ATGGACTGGAATTTGAAAGCGCCTTCTTGGGATTTGAGTGAATTAGAGCAAGCAACGTTGCCCGGCTTAGAAACAGTTGGTGGATCAAGTAGATTTGGAGTTCATAGAAGCAACGGGGAATTTTCTGTTGATTTGAAGCTTGGTCAGGTGGGGAATTCAGGGACAGATTCAGTGGCTAAGTGGAAAGATCATGTTGGAGTCTCAAAAATGGCATCTTCCCCCTCATCAGGTTCGTCCAAGAGAGCACGAGCTCTTAACAACGGAACCCAGATGGTGTCATGCCTTGTGGATGGGTGCAATTCAGATCTTAGTACTTGTAGGGACTATCATAGGCGCCATAAGGTCTGCGAAATCCACTCCAAGACTCCAGAGGTCACAATTGGTGGCCACAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCTCTAGAGGAATTtgatgaaggaaaaagaagctgCAGGAAACGCTTAGATGGACAtaacagaagaagaagaaagcctCAGCCAGAGCCTCTCACGCGATCTGGTAGCTTTTTGTCCAATTATCAAGGTACCCAGTTGTTGCCTTTCGCAAGTTCACATGTGTTTCCTTCTGCTGCTATGGTGAACCCTAGTTGGAGTGGAGTTATGACTTCGTGCGCAGATGCGGCTAGGCTCCATAGACAAAGCCAAAGCCAACACCAACAAGTGCATTTGGTTAATAAACACGAGCTGTTTCTTGGATCATCTCCCACCACCAGaagctacaaaggtgagaaTCCAAGAGTGAACAGCCAAAACCCACCTCTTGCAGTTGCTTCTTCTGTGTGTCAGACGCTAAACCTGAGCAGGAGCAGCCCTTTGTCTGAAAGCAGTGGCAGTGGCAGTGGAGTCAGAAGCAAAATGTTTTGTGATAGTTTAACGAGTTCAGTCCACGACACTCATTGTGCTCTCTCTCTTCTGTCATCCCCCCAGACGCAGACACCTGGAAATGGTTTAAACCAAATGGTGCAGCCTCATTCGATCGCCTTCATTCAGCCATTGGGACTCAGCCTTCATGATAACAACTTAGACCCCGTCGACCAAGTTCTGGTTTCCAATGCCACTGACACTAATAATGTTCATTGCTCACCGATGTATAGTATGGGTTCTCATGGATCCCACGGGAATGAAACCCCACACCCGTTTCCCTTCCATTGGGAATA 1187 0.4532 MDWNLKAPSWDLSELEQATLPGLETVGGSSRFGVHRSNGEFSVDLKLGQVGNSGTDSVAKWKDHVGVSKMASSPSSGSSKRARALNNGTQMVSCLVDGCNSDLSTCRDYHRRHKVCEIHSKTPEVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFASSHVFPSAAMVNPSWSGVMTSCADAARLHRQSQSQHQQVHLVNKHELFLGSSPTTRSYKGENPRVNSQNPPLAVASSVCQTLNLSRSSPLSESSGSGSGVRSKMFCDSLTSSVHDTHCALSLLSSPQTQTPGNGLNQMVQPHSIAFIQPLGLSLHDNNLDPVDQVLVSNATDTNNVHCSPMYSMGSHGSHGNETPHPFPFHWE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00234 395 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Bva05g00234 395 MobiDBLite consensus disorder prediction 244 263 - -
Bva05g00234 395 MobiDBLite consensus disorder prediction 158 178 - -
Bva05g00234 395 Pfam SBP domain 94 167 IPR004333 GO:0003677
Bva05g00234 395 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 395 IPR044817 GO:0003677
Bva05g00234 395 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 395 - -
Bva05g00234 395 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Bva05g00234 395 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00234 Bva-Chr5 1145613 1148946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00234 1 395 SBP-box Gene Family AT5G50670 42.787 6.57e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva05g00234 SBP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00234 - - qlo:115962524 479.174