Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00202 ATGGCAGCCTTTTCATTCCAGTATGATCATCCTTTACTTGTTGACCCAGCACCAGCACTGTTGCCCAATACTTTTAAGCTCTCTGTCTTCTCGGACCATGTGCATACAATTACAAACCCAGCTCCTCCTTCTCAATTTTACCCATACCATCAGCCTCTTCTGCACCACCCATCTACTATTAATGTTACAACTAGCTGTGTTGATCAAAGCTCTAAGATTACTATAAGTGACAATGAGCCTTCTGTGACCAAAAACCACAGTCCCGAAACCTCCATGGTCGTCGATAAGCTTGAAACTGGGGAGCAGGTTACCCAGAAGATGGCTCCTGCGgaaaagaagaggagaaaCAGAAACGGGAATTCTCCCCAGTCTTCTAAGGATGCAACAGAAGGGAGAAATAACAAGAAACAGAAGAGGAGCAATGgtggagagaaagaagaggacaatacaaaagcagaaaagaaagatcagAAGAGAGGTCCCGAGGAGCCCCCAACAGGTTATATCCACGTCAGAGCAAGAAGGGGTCAAGCTACTGATAGCCACAGCCTAGCCGAAAGGgtaagaagagaaaaaataagtgaGAGGATGAAGATGTTGCAGCGACTAGTGCCGGGTTGTGATAAGATAACTGGAAAAGCCCTCATGTTGGatgaaataatcaattatGTCCAGTCATTACAGAATCAAGTAGAGTTTCTCTCAATGAAGCTTGCTTCTGTAAATCCCATGTTCTATGATTTCTCAATGGACTTAGACAACCTCATGGTGAGACCAGAGAAATTGAATAGTGTCGCATCAACACCAGCTTCTATGACACAATGCAGCCCAAACCAGATCACAACTTTTGCTGATACAACCACCGTTACTAGCTTTCCCACCGCTAATAACTTAGTTTTGGACAATTCTGCTTCGATTTTACTTAGATCAAATGATGGTGGTAATCAGTTCTGGGATGTGGAAGTGGAAGACCAGAGACAGAAGCTCCTTAATTCATATGGGTTCAGCAGCAGCTTATGTTACtttcatta 1031 0.4006 MAAFSFQYDHPLLVDPAPALLPNTFKLSVFSDHVHTITNPAPPSQFYPYHQPLLHHPSTINVTTSCVDQSSKITISDNEPSVTKNHSPETSMVVDKLETGEQVTQKMAPAEKKRRNRNGNSPQSSKDATEGRNNKKQKRSNGGEKEEDNTKAEKKDQKRGPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKITGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDFSMDLDNLMVRPEKLNSVASTPASMTQCSPNQITTFADTTTVTSFPTANNLVLDNSASILLRSNDGGNQFWDVEVEDQRQKLLNSYGFSSSLCYFH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00202 343 MobiDBLite consensus disorder prediction 76 92 - -
Bva05g00202 343 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
Bva05g00202 343 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 343 IPR024097 GO:0006355
Bva05g00202 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Bva05g00202 343 MobiDBLite consensus disorder prediction 129 185 - -
Bva05g00202 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 244 IPR036638 GO:0046983
Bva05g00202 343 MobiDBLite consensus disorder prediction 76 185 - -
Bva05g00202 343 SMART finulus 183 233 IPR011598 GO:0046983
Bva05g00202 343 Gene3D - 174 246 IPR036638 GO:0046983
Bva05g00202 343 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 343 - -
Bva05g00202 343 CDD bHLH_AtBPE_like 167 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00202 Bva-Chr5 1012057 1014498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00202 1 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.408 2.27e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva05g00202 HLH 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00202 - - gmx:100806696 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00202 05 1012057 1014498 Bva05g00202 05 1012057 1014498 ECH