Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00187 ATGCCTTTTGAAGTAATGGATCAAAGGGGCGCATCTGCCTCATCCCATTTTTTTGAAGACGTCAGATCTGAGAGGAATGTTGGATTGCAGAAGCTAAGGCCCAACCATGATCATTACCAACAAGGTAAGAATGGTACGGTGGCATCACATGGCAGCATTTTGAATGCTTCCTCACCCCAAGCAACAAGTGGTGCGAGGACAGGCTTGCCAATGTCACATATGGTTCTGTctggaaaattttcagaaaaactGCATGGTGGTGGAGAAGAAGACATTATGGATGTGTTGGAGCCTTCTAAGGAATCCCTGAATGATCATCCGGGATCATGGTCTAATGTTTATACACAGCCAGCATCTAGCTCATATGGTTTAATTGGAAGCAAGATTATCACTGATGCTGCCTCTCGTGAAAGTAGTCTATTCTCAAGCTCACTATCTGAGATATTTAACCAAAAGTTGAGGTTGATGGGGAATGATGTCCTGTCTCATCAGCCCCTTACTGTTGATTCCCCTCATGAGAAAGAACCATATGTACCTCTTGAAGATATTGAAGCTGAGACTATTGGGAATCTCCTTCCTGATGAAGATGATCTCTTTTCTGGTGTCATTGATAAGTTAGGACACAATGCTCATGCCCGCACAAGTGATGACTTGgaagattttgatttgtttagtAGTGTTGGAGGCTTGGAGCTGGAAGGGGAAGAACATCTAAGTTCaggaaaaagaattgttgGTCTGGATGGAGATTCTGTTTATTTTGGAGGCTCTAAGGGAAAGCTTCCTTTTGGTGGACAACCTTCTAGAACACTTTTTGTTAGAAATATCAATAGCAATGTTGAAGATTCTGAATTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCACTTATACAGCTTGCAAGCATCGTGGCTTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAGCGCTTCAAAATAAGTCATTGAGGTCTAGGAAACTTGACATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAGGATATTAGCAATGGTACACTGGTGCTATCTGGTCTTGATTCTTCCGTGTCAAATGATGAGCTTCATCagatttttagattttatggAGAAGTTAAAGAAATCTATGAAGCTCCAGAAATGAATCATCACAAGTTTATAGAGTTTTACGATGTGCGAGCTGCAGAAGCTGCTCTTCATGCATTGAACAGGAGTGACATTGCTGGGAAGCAGATCAAGCTTGAACCAGGCTATCCGAGGGACGTAACATGCCTGATGCAGCAGTCTCAGAAGGGCCATGATGAACCTGATCTTGGTCAAAGTCCTTTTGACAACTTGTCGTTAAGACAGAAGGCAGCAATGTCTTCCAGAGTCAGTTGCTTGGATAATGGATTCAGTCAGGGATTTCAATCTGCAATAGCGTCCCCTATGAATGCATTTATTGATAATGCATTCTCTCATGGAAATTCTGGCGTCCATAACACTGTGAGTGGGGCATCTGCTGGAAAAGCAACTGGTGTTAGCGAATCCAGTAACTTAGTTGATGCAATGAAATTTGCATGTGTTCCAAGATTCCATCCTCATTCCTTCCCTGAGTATCAGGATGGTTTAGCTAATGGCAGTCCTTACAACTTTCCAAACACCATTAGCAATATGGCTGGCAATATTAGTACTGGCATGAAAGAAGGTTCTGATAGCAGGCACATTCAAGGGATGGGTTCAACTGGGAGCCTCATGGAATTTAATGGAGGAGGAAATGGTAGCTGCCCACGTGCTGGACTTTATCACATGTGGAACAGCTCCAATCTCCATCAGCAATCTCCATCAAGTCCCATGATGTGGCAGAAAGCACCATCGTTCACTAATGGTGCTTGTGCTCCTAGCCTTCCACAAATGCCCAACTTTCCTAGAACACCGCCTCAGATGTTGAGAGCATCACATATGGAGCATCATGTTGGATCTGCACCAGTTGTTACAGCTTCCCCCTGGGACAGGCAGTATTCTTATTTGGGAGAGTCTCCTGAAGCTTCTAGTTTTCACTTGGGTTCTCTAGGGAGTACAGGCTTTCCTCGTTCATGGCAATTGCATCCCCCAGATTTTCTCTCTCACAACATGCTTTCTCACGTTGGTGGAAATGGCACAGAATTTATGCCCAATGCTGGGCAGAGCTCTCCTAAACAATTGTCACAAGTTTTCCCTGGGAGACATCCCATGACTTCGATGTCAAAATTTGATTCTACCAGTGAGCGAATGAGAAACATGTATCACCGAAGAAGTGAAGCAAATACTAACAGTGCGGACAAAAAGCAGTATGAACTAGACCTTGGCCGCATACTAAGTGGGGAAGACAACCGAACAACCCTTATGATAAAGAATATTCCTAACAAGTATACTTCGAAGATGCTCCTTGCTGCCATAGATGAGCATTGCCGGGGAACTTATGATTTTCTGTATTTACCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAGATTATTCCATTTCATCAGGCATTCAATGGAAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCTTCACTGGCATATGCCCGGATTCAGGGAAAAGCCGCTCTTATTGCCCATTTCCAGAATTCAAGCTTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAACCCTTCCCCATGGGTACCAATATTAGATTGAGACCTGGAAAAACTCGCACTAGTGGTAATGAGGAAAACCGCAGTCAAGGGAGTGCTTCAACTTTGGCAAGTGAGAGGTGGAGCTTGGAGGAAAAGTGGCCTCACAATTTTTGCCTATA 2897 0.4232 MPFEVMDQRGASASSHFFEDVRSERNVGLQKLRPNHDHYQQGKNGTVASHGSILNASSPQATSGARTGLPMSHMVLSGKFSEKLHGGGEEDIMDVLEPSKESLNDHPGSWSNVYTQPASSSYGLIGSKIITDAASRESSLFSSSLSEIFNQKLRLMGNDVLSHQPLTVDSPHEKEPYVPLEDIEAETIGNLLPDEDDLFSGVIDKLGHNAHARTSDDLEDFDLFSSVGGLELEGEEHLSSGKRIVGLDGDSVYFGGSKGKLPFGGQPSRTLFVRNINSNVEDSELKALFEQYGDIRTTYTACKHRGFVMISYYDLRAAQNAMKALQNKSLRSRKLDIHYSIPKGNAPEKDISNGTLVLSGLDSSVSNDELHQIFRFYGEVKEIYEAPEMNHHKFIEFYDVRAAEAALHALNRSDIAGKQIKLEPGYPRDVTCLMQQSQKGHDEPDLGQSPFDNLSLRQKAMSSRVSCLDNGFSQGFQSAIASPMNAFIDNAFSHGNSGVHNTVSGASAGKATGVSESSNLVDAMKFACVPRFHPHSFPEYQDGLANGSPYNFPNTISNMAGNISTGMKEGSDSRHIQGMGSTGSLMEFNGGGNGSCPRAGLYHMWNSSNLHQQSPSSPMMWQKAPSFTNGACAPSLPQMPNFPRTPPQMLRASHMEHHVGSAPVVTASPWDRQYSYLGESPEASSFHLGSLGSTGFPRSWQLHPPDFLSHNMLSHVGGNGTEFMPNAGQSSPKQLSQVFPGRHPMTSMSKFDSTSERMRNMYHRRSEANTNSADKKQYELDLGRILSGEDNRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRLRPGKTRTSGNEENRSQGSASTLASERWSLEEKWPHNFCL 964
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00187 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Bva05g00187 964 MobiDBLite consensus disorder prediction 926 950 - -
Bva05g00187 964 CDD RRM3_MEI2_like 795 880 IPR034454 -
Bva05g00187 964 CDD RRM1_MEI2_like 268 343 IPR034453 -
Bva05g00187 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Bva05g00187 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Bva05g00187 964 Gene3D - 352 446 IPR012677 -
Bva05g00187 964 MobiDBLite consensus disorder prediction 909 951 - -
Bva05g00187 964 SUPERFAMILY RNA-binding domain, RBD 267 429 IPR035979 GO:0003676
Bva05g00187 964 MobiDBLite consensus disorder prediction 727 754 - -
Bva05g00187 964 Pfam RNA recognition motif 2 792 888 IPR007201 -
Bva05g00187 964 SUPERFAMILY RNA-binding domain, RBD 794 879 IPR035979 GO:0003676
Bva05g00187 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Bva05g00187 964 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 951 - -
Bva05g00187 964 SMART rrm1_1 270 338 IPR000504 GO:0003723
Bva05g00187 964 SMART rrm1_1 355 423 IPR000504 GO:0003723
Bva05g00187 964 Gene3D - 258 351 IPR012677 -
Bva05g00187 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 951 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva05g00187 Bva-Chr5 912624 920177 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00187 267 420 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 2.32e-07 52.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00187 - - gmx:100797893 1360.13
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01573 06 11250487 11257991 Bva05g00187 05 912624 920177 ECH
Bva05g00187 05 912624 920177 Bva05g00187 05 912624 920177 ECH