Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00184 ATGTCTGCCATAGTTTCCGCTCTTACACAAGTTATTGGTGGCAGTGGCACCCACATGACCAGTGATCCACTTGAGTCCACGGCACATCAAAATCATGAACCATCTCAAACGGTTCAAGATCAAGGGAACGTAAGAAGGAGACATTACAGAGGAGTGAGGCAAAGGCCATGGGGAAAGTGGGCGGCAGAGATTCGGGATCCAAAGAAGGCAGCGAGAGTGTGGCTTGGAACATTCGACACTGCCGAGGCCGCTGCGCTTGCATACGATGAAGCTGCTCTAAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTTCCTGAGAGGGTTCAATTAGGGACGTCTGGTGAATTTGGTTTCTTCACAAATCGTCCATCTGATAATTCAAGCAGTAATAGTAGTCATCGTCGTCATGAACAAGTATCTCCTGCTACCCATCCTCCTCCTTTTCCACAACACATTAATCCTAATTTGCAATTCATGGGGACCACTTCCAACGAAAACAACTTCAGTACTTATGGCCCGTCTCCTGCTTTCTATTCAAGGGAcgtgttttcttcttcttcttcttcacagCCGCTAGCACCTCCATCTTCTGGATTATCtcatcaacaacaacaacaagaTCTTCTAAGGTTTTCGATGCAGTTTGGAGGTTCTTCTTCTAATACTAGTTCTGATCCAACACAGAATTGGAATAATTATCAATA 704 0.4219 MSAIVSALTQVIGGSGTHMTSDPLESTAHQNHEPSQTVQDQGNVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQLGTSGEFGFFTNRPSDNSSSNSSHRRHEQVSPATHPPPFPQHINPNLQFMGTTSNENNFSTYGPSPAFYSRDVFSSSSSSQPLAPPSSGLSHQQQQQDLLRFSMQFGGSSSNTSSDPTQNWNNYQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00184 234 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Bva05g00184 234 PANTHER DNA-BINDING DOMAIN 1 216 IPR044808 GO:0003700|GO:0009873
Bva05g00184 234 MobiDBLite consensus disorder prediction 114 166 - -
Bva05g00184 234 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Bva05g00184 234 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Bva05g00184 234 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Bva05g00184 234 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Bva05g00184 234 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Bva05g00184 234 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Bva05g00184 234 MobiDBLite consensus disorder prediction 182 234 - -
Bva05g00184 234 MobiDBLite consensus disorder prediction 14 42 - -
Bva05g00184 234 MobiDBLite consensus disorder prediction 114 128 - -
Bva05g00184 234 Gene3D AP2/ERF domain 47 108 IPR036955 GO:0003700|GO:0006355
Bva05g00184 234 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00184 Bva-Chr5 893342 894587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00184 1 116 AP2-EREBP Transcription Factor Family AT5G61890 66.400 1.01e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva05g00184 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00184 - - gmx:100799190 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01576 06 11276684 11279055 Bva05g00184 05 893342 894587 ECH
Bva03g00221 03 1348640 1350521 Bva05g00184 05 893342 894587 ECH
Bva04g01911 04 19438822 19440844 Bva05g00184 05 893342 894587 ECH
Bva06g01678 06 11780672 11782758 Bva05g00184 05 893342 894587 ECH
Bva05g00103 05 522496 523054 Bva05g00184 05 893342 894587 ECH
Bva05g00184 05 893342 894587 Bva05g00184 05 893342 894587 ECH