Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00183 ATGGATCAAGAATCATTCACCGCCAGCATATTTAAGTGGGATCCTAGGAGCTTCCTTCCCGTTGCAACGACTAGCCGACCACCTGCTATGCTGGACTACTCGATATCTGTGGTTCCTCCAGCACAGGCGGTGAGAGCGCCGCCGCCGAGGGAGCTAGGAGGCTTAGAGGAGTTCTTCCAGGCTTATGGCATCAGATACTATACGGCAGCCAAAATTGCGGAACTTGGGTTCACGGTGAATACCCTTGTGGACATGAAGGATGAGGAGCTCGATGACATGATGAGTAACCTCTCTCGGATTTTCCGTTGGGATCTGCTCGTTGGGGAGCGGTACGGTATCAAAGCCGCCATTAGAGCTGAACGAAGACGCATAGATGAAGACGAAATCAGGCGCCGCAAACTTCTCTGCGCGGACACCACCACTACCACCGCCAACGTCCTTGATGCTTTATCCCAGGAAGggTTGTCGGAGGAGCCGGTGATGCAACAGGAAAAAGAGGCGATGGGAAGTGTGGGAGGGTGCACGTGGGACTCGGTAGGGTTGGCGGAGGGGAGGAGGCAAAAAACGACAACTAAGACTAGTCGTCGCGGGCATCAGAACGATGATCCAGAGGAAGAAGGTGAAGAAAATGACGAAGGCAACAATAACGGCGGTGGTGGAGAGTGTGGAAGCACCGAGAGACAGAGGGAGCACCCATTCATCGTGACCGAGCCTGGGGAGGTTGCACGTGGCAAGAAAAACGGCCTGGATTACCTTTTCCACCTCTACGAACAATGCAAAGACTTCTTGATTCAAGTCCAGAACATCGCCAAGGACCGAGGCGAGAAATGCCCCACCAAGGTGACAAACCAGGTATTCAGGTACGCGAAGAAAGCAGGAGCAATCTACATTAACAAGCCCAAAATGCGGCACTACGTGCATTGCTATGCCTTGCACTGTCTTGACGAGGAGGTTTCGAATGAACTGAGGAGAGTTTTCAAGCAGAGAGGAGAGAACGTTGGGGCGTGGAGACAAGCTTGCTATAAGCCACTTGTGGGTATCGCAGCACGTCAAGGTTGGGACATTGATGCCATCTTCAATGCACATCCTCGTCTTTCCATTTGGTACGTCCCAACCAAGCTTCGCCAGCTTTGTCATGCCCACAGGAACACCGTCACTGGTGCTGCTTCAACCTCTCTCGGTTTCACTATCAATCTTCCTTTCTA 1205 0.5237 MDQESFTASIFKWDPRSFLPVATTSRPPAMLDYSISVVPPAQAVRAPPPRELGGLEEFFQAYGIRYYTAAKIAELGFTVNTLVDMKDEELDDMMSNLSRIFRWDLLVGERYGIKAAIRAERRRIDEDEIRRRKLLCADTTTTTANVLDALSQEGLSEEPVMQQEKEAMGSVGGCTWDSVGLAEGRRQKTTTKTSRRGHQNDDPEEEGEENDEGNNNGGGGECGSTERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCKDFLIQVQNIAKDRGEKCPTKVTNQVFRYAKKAGAIYINKPKMRHYVHCYALHCLDEEVSNELRRVFKQRGENVGAWRQACYKPLVGIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAHRNTVTGAASTSLGFTINLPF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00183 401 MobiDBLite consensus disorder prediction 188 203 - -
Bva05g00183 401 PANTHER PROTEIN LEAFY 1 392 IPR002910 GO:0003677|GO:0006355
Bva05g00183 401 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 221 386 IPR035209 GO:0003677
Bva05g00183 401 Gene3D Protein LEAFY 223 392 IPR038276 -
Bva05g00183 401 MobiDBLite consensus disorder prediction 151 237 - -
Bva05g00183 401 Pfam Floricaula / Leafy protein SAM domain 51 128 IPR035079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00183 Bva-Chr5 885668 887867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00183 1 384 Orphan Transcription Factor Family AT5G61850 62.406 6.35e-158 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Bva05g00183 C_LFY_FLO 2.2e-105 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00183 - - gmx:100798196 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00183 05 885668 887867 Bva05g00183 05 885668 887867 ECH