Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00160 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCATACAAACAAAGGCGCTTGGACCAAAGAGGAAGACGAACGCCTCGTCAACTATATCAAGCTTCACGGCGAAGGCTGTTGGAGATCTCTTCCTAAAGCAGCTGgcTTGCTTCGATGTGGCAAGAGTTGCAGACTCAGATGGATAAACTACCTGAGACCTGATCTCAAGAGAGGAAACTTCACCGAAGAAGAAGACGAGCTCATCATTAACCTCCACGGCTTGCTTGGAAACAAATGGTCTCTAATAGCCGCTAGATTACCGGGAAGGACGGACAACGAGATCAAGAACTACTGGAACACCCACATCAAACGCAAACTCTATAACCGCGGACTCGACCCTCAAACTCATCGCCCGCTCAACGCCGCCGTCGCTACCACCGCCACAAATACTAGTGCCCCGGTGGTCGCTgcaactaataataaaaaggctAACGACGATAGCATtagcagcagcagcaattTTCATTCAATGACGCCTCCTAGTCCTAACTTTGGTATCAGTGGCTATAccaatacaaaaattataacgGACTCGGCTGCCGAAGATTCAAACTCCAACAGCAGCAGCGGCGTTACCGCAGAGGTAGAAGCCTCTCCTCAACTCAACCTTGAGCTCTCCTTGGGCCTTCCCTCTCAAGTTTCTTTGAAACGACAACGACGAGAGCAACGACATCAACGGGTTTTGTACCAGTGGTATGGGAATGCTCGTCAAGGTGTATGTTTATGTTGCAACCTAAAGTTTCAGAGTAACCAAACAGCAACGTGCGGCTGCAATTGCAAAACCATGGGTACTGCGCCTACTACCGATAATAATCTGTATAGATTCTACGGACCCTTGGATATTTA 875 0.4549 MGRSPCCEKEHTNKGAWTKEEDERLVNYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINLHGLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYNRGLDPQTHRPLNAAVATTATNTSAPVVAATNNKKANDDSISSSSNFHSMTPPSPNFGISGYTNTKIITDSAAEDSNSNSSSGVTAEVEASPQLNLELSLGLPSQVSLKRQRREQRHQRVLYQWYGNARQGVCLCCNLKFQSNQTATCGCNCKTMGTAPTTDNNLYRFYGPLDI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00160 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva05g00160 291 CDD SANT 69 112 IPR001005 -
Bva05g00160 291 MobiDBLite consensus disorder prediction 150 172 - -
Bva05g00160 291 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Bva05g00160 291 CDD SANT 16 61 IPR001005 -
Bva05g00160 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva05g00160 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 262 - -
Bva05g00160 291 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Bva05g00160 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva05g00160 291 SMART sant 66 114 IPR001005 -
Bva05g00160 291 SMART sant 13 63 IPR001005 -
Bva05g00160 291 PANTHER TRANSCRIPTION FACTOR MYB7 1 262 - -
Bva05g00160 291 Gene3D - 69 116 - -
Bva05g00160 291 Gene3D - 14 66 - -
Bva05g00160 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva05g00160 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00160 Bva-Chr5 787649 789139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00160 1 287 MYB Transcription Factor Family AT4G38620 51.203 2.13e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva05g00160 Myb_DNA-binding 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00160 K09422 - gmx:100808083 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00160 05 787649 789139 Bva05g00160 05 787649 789139 ECH