LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva05g00152	ATGGAGGAGCAGGATATCAAATTTCTGTGCAAGAGGAAAGGTGGGAATAGGAAAAAATATCAGACCCATAAAGAGTGGTGCCGAACTGTCCAATCTCAACCTGATGTGATCTCAATGTCATTCATACCAATTACATCTTTACTTGGTGGAATTAATGGAAGTGGATTTTTGACGCATGCCATAAATCTCTATCTTCGATATAAACCTCCAGTTGAAGAACTACATCAGTTCTTGGAGTTCCAGATTCCAAGGCATTGGGCCCCTGTTTTTGGTGAGCTTGCACTTGGTCCTGAAAGGAAGGCACCAAATAATGCGTCTTTGCAGTTCAGTTTCATGGGCCCTAAGCTTTATGTGAACACAACACCGGTTGATGTGGACAAGAAGCCTGTGACGGGCCTTCGATTGTatttggaaggaaagaaaagcaacTGCTTGGCGATCCACTTGCAACACCTTTCCTCACTGCCCATGTCCCTCCTACTGGAGGATGAGCTGAATGAGAGTGCATCAAATGCCTCCTCTGAACACAAGTACTATGAGAAGGTCCAGTGGAAGAGTTTCTCTCATGTATGCACAGCTCCTGTCGAATCTGACGAGGATAACAACGTTGTGACCGGCGCTTACTTCCAAGTTGGAGAGACTGGTTTAAAGAAAGTTTTATTCTTAAGACTTCATTTCTCTAAAGTTGTTCGTGCAACAAGCGTGAAAAGGACCGAATGGGATGGTTCTCCTGGCTCTACCCAGAAATCTGGAATAATCTCAACTATAATTACCACTCGTTTCTCAACTCCTCAAAAACCCCCTCCACAGCCATCTGATGTGAATGTTAACTCTGCTGTATACCCTGGAGGACCTCCTGTGCCCACGCAATCGCCTAAACTTCTGAGATTTGTTGACACAACAGAGATGACAAGAGGACCACAGAACTCCCCTGGGTACTGGCTTGTGTCTGGAGCAAGGCTTTTTGTGGACAAGGCAATATATACAAACGGAGGCCGCTCTCCTCTCGCTTCACCGCACATCCTAACTTACAACATTCAGCTAGCTTTACCGTCGCTTCTCTCTGTTGATAGAAATAACCGTGGTTCTGTCTCAATGCCTCTTTTAAAGCGAAAGCTTTTTGTCTTGGCCGAGCCACCCAAGGATTTGGAGACCCATGAGCTTGTTTACCAAGTCCGattcacaaaagaaatattccgAGATTATCATAATTATTTGAACCGTATGAATTTATATCGCCAGAGAGTTTGGATGTGTAAAGTCACTGGTAAAACTGGCTTGACTTATGAGGAGGCTTTGTTATCGGAAAAACGTGCCACTGAAAAAGTTCAACAATTTCCCAAAGAATTAATACCTCCTGCTCTGCGAATTATTCAGTACAGTATGCTCTCTTTAAAGGATCTTGCCGATGCAGTAGCTGCAAAATTGCAGGAACGATTGTTTGTGGGTGCTGAGCTGTATGGTAAAAAGGATGATGATGTACATCCTTGCAGAATATTAAAAGTCATAGAGGAAGGGGTTGATAAATTCCGTTATGAGGTAGCTTGGCTTGATAAAAATAGGAATATAATTGGAAGTGCACAAGTAAGCGCCAAAGAATTGGTACAAAAAAAGCAGCCTTTTAGTAGGAACATGTTGAAGTCCTTTATCCGGGAATCTACACATCGTAATGTTCCTTGGGTGCTACATGATGAACTAGCACGGAATTATGGGATTTCAACTGATATCCCAGAGGAATTAAGAGGACAGATTTTCTTCAGGAATGGGCTTCTGGTCtgcaataagaaaagaaaaaatgagGAATTAAAAGGAGAAactgaaaaatgtaaaaggaaGAAATCGGACGCGAGGAAAGTTGATGGTTCTAACACAGAGGAAGAAAATGACCAACTCAACGAAGAACCAGTCAAATATCCTATTGATGATCTACTGGTGAAGCCTAGTCCAGATGATCCTGTTTTCACTGAACGTCCTTCTCCATCAAGAGATTTCAATGTTCCAATTTATTGTGTAGGGGATCTCTTAATGGTTTGGGACTTTTGCACTTCATTTGGGAGGCTGTTACACCTGTCGCCCTACTCTTTAGAAGACTTTGAAAATGCAATCTGCCACAAAGAGAGCAATGTGGTTCTCCTTGTGGAATCTCATGCAGCACTCTTACGATTGCTCATAAAAGATCGTGGCGAATTCTCTTCAGCTGTAGAGAATAAAAATCGGAAGTCTAAGataACAATGATTACTTGGACAGACTATCTATGCGATTTTCTAGAAATGATCAAGGTTTCTGGATTACGCCAATATGAAGCTACCATAAAACGTGGGCATTATGGCCTTGTGGATGCTCATGCAAAATTAGAGATTTTATGTGAATTGGTCAATCGAGCCCTTGAAACTGTGACTATCAGGGAACAGCTGGATGATTTTATTGAGCAGCGCCAGGTACTTGGGGCCACTAGAAGGGGAGAAGCAATAGAAGATGCTAGAAAGAGGAGAGAACACAAGGAACGGTTGAAAGCTGAGCCTGACAGTAATGGAAGTGCGGATGGGCATCTAGCAAGTATCTCGGAAAATGATAATCACAGTAGACAGAATGGAGAtgtagaaaagaagagaaatggaGAGATAGAATCATCTGGGCAAAAGGATGCACTGGATAGAAGaagTGGGATCGAGAATTCAAACCCTggatcaaaaaagaaatctaagaAGCTAAGTTCTGAGCTGAAAGAACCAGCAGAAAATGGAAAGGAATCACAGAAACCGTTGAAGGGTGATAAGGATCTATCATACAAGACTAGTATAGAACAGCGGAGAGAACATTATGAGCGGGAGATGGAGAAACGATTTATTCGTACAAACCCCTTGGGTAAAGACAGATATCATAACAAGTACTGGTGGTTCCGCCGTGATGGGAGGATATTCGTTGAGAGTCCTGAATCCAAGGAGTGGGGATACTATGGCAGCAAGGAAGAGCTTGATGCATTGATGGGTTCACTGAACTGTAAGGGTGAACGCGAAAGGGCACTACAAAAACAAGTGGAAAAATATTATGGTAGAATATGCTCAGAACTCCAGAAGAGATCAAGGGATCTGACAAATAAGATTGCACTGGACGAGTCTGTGGTCCGAAGGTCTACTCGTGTTCGTGCCCCGCCTAGGGAAAATCCTGCTAATGCCTTCCTCAGATATGTTAATAAGTGGAAAGAAGAGTA	3212	0.4141	MEEQDIKFLCKRKGGNRKKYQTHKEWCRTVQSQPDVISMSFIPITSLLGGINGSGFLTHAINLYLRYKPPVEELHQFLEFQIPRHWAPVFGELALGPERKAPNNASLQFSFMGPKLYVNTTPVDVDKKPVTGLRLYLEGKKSNCLAIHLQHLSSLPMSLLLEDELNESASNASSEHKYYEKVQWKSFSHVCTAPVESDEDNNVVTGAYFQVGETGLKKVLFLRLHFSKVVRATSVKRTEWDGSPGSTQKSGIISTIITTRFSTPQKPPPQPSDVNVNSAVYPGGPPVPTQSPKLLRFVDTTEMTRGPQNSPGYWLVSGARLFVDKAIYTNGGRSPLASPHILTYNIQLALPSLLSVDRNNRGSVSMPLLKRKLFVLAEPPKDLETHELVYQVRFTKEIFRDYHNYLNRMNLYRQRVWMCKVTGKTGLTYEEALLSEKRATEKVQQFPKELIPPALRIIQYSMLSLKDLADAVAAKLQERLFVGAELYGKKDDDVHPCRILKVIEEGVDKFRYEVAWLDKNRNIIGSAQVSAKELVQKKQPFSRNMLKSFIRESTHRNVPWVLHDELARNYGISTDIPEELRGQIFFRNGLLVCNKKRKNEELKGETEKCKRKKSDARKVDGSNTEEENDQLNEEPVKYPIDDLLVKPSPDDPVFTERPSPSRDFNVPIYCVGDLLMVWDFCTSFGRLLHLSPYSLEDFENAICHKESNVVLLVESHAALLRLLIKDRGEFSSAVENKNRKSKITMITWTDYLCDFLEMIKVSGLRQYEATIKRGHYGLVDAHAKLEILCELVNRALETVTIREQLDDFIEQRQVLGATRRGEAIEDARKRREHKERLKAEPDSNGSADGHLASISENDNHSRQNGDVEKKRNGEIESSGQKDALDRRSGIENSNPGSKKKSKKLSSELKEPAENGKESQKPLKGDKDLSYKTSIEQRREHYEREMEKRFIRTNPLGKDRYHNKYWWFRRDGRIFVESPESKEWGYYGSKEELDALMGSLNCKGERERALQKQVEKYYGRICSELQKRSRDLTNKIALDESVVRRSTRVRAPPRENPANAFLRYVNKWKEE	1070

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva05g00152	1070	SMART	testlast3	668	729	IPR018501	-
	Bva05g00152	1070	Pfam	DDT domain	670	726	IPR018501	-
	Bva05g00152	1070	Pfam	ATP-utilising chromatin assembly and remodelling N-terminal	389	485	IPR013136	-
	Bva05g00152	1070	MobiDBLite	consensus disorder prediction	825	933	-	-
	Bva05g00152	1070	MobiDBLite	consensus disorder prediction	603	633	-	-
	Bva05g00152	1070	ProSiteProfiles	Membrane attack complex/perforin (MACPF) domain profile.	1	78	IPR020864	-
	Bva05g00152	1070	ProSiteProfiles	WAC domain profile.	387	492	IPR013136	-
	Bva05g00152	1070	PANTHER	BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A	366	1068	-	-
	Bva05g00152	1070	MobiDBLite	consensus disorder prediction	825	843	-	-
	Bva05g00152	1070	MobiDBLite	consensus disorder prediction	861	933	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva05g00152	Bva-Chr5	746950	757188	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva05g00152	670	726	Homeobox Transcription Factor Family	AT1G28420	45.614	3.26e-06	49.7

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	DDT	Bva05g00152		WAC_Acf1_DNA_bd	1.2e-29	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva05g00152	-		-	gmx:100789956	981.859

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva05g00152	05	746950	757188	Bva05g00152	05	746950	757188	ECH

Showing 1 to 1 of 1 entries