Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00130 ATGGGAGATGGTATTGTTGGCAGCAGCGGCAACCGGGGCAATCCCCACAACAGCAATAGTAGCAGTAATAGTGGCAATAGCAATAAACCCGAGTGGCTGCAGCAATACGATCTGATAGGGAAGATTGGTGAAGGTACCTATGGTCTTGTATTCCTTGCAAGAATTAAGTCTCCAACCAATCGCGGAAAATCCATTGCCATCAAGAAATTCAAGCAGTCGAAGGATGGTGATGGCGTCTCACCTACTGCCATTCGTGAAATTATGTTACTCAGGGAGATAACACACGAAAACGTTGTGAAGCTCGTGAATGTTCATATCAATCATGCTGACATGTCTCTGTATCTGGCTTTTGATTATGCTGAACATGACCTTTATGAAATCATTAGACACCATAGGGACAAGGTCAACCATTCTATTAATCAATACACTGTTAAATCATTACTCTGGCAGCTGCTTAATGGACTAAACTATCTGCATAGTAATTGGATTATTCATCGTGATCTAAAGCCATCAAATATTTTGGTTATGGGCGAAGGAGAGGAACATGGTGTGGTTAAAATTGCTGACTTTGGACTTGCAAGAATATATCAGGCCCCTTTGAAGCCATTATCTGAAAATGGAGTTGTCGTAACCATTTGGTATCGGGCACCTGAGTTGCTTCTTGGGGCAAAACATTATACTAGTGCTGTTGATATGTGGGCTGTCGGATGCATATTTGCTGAGCTGTTGACGTTGAAGCCACTATTTCAAGGGGCGGAAGTCAAAGCTACACCAAATCCTTTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTCTAGGCCATCCAACGTTGGAAAAGTGGCCTTCCCTTGCGAATCTTCCCCATTGGCAGCAAGACCTGCAACATATACAAGGGCACAAATATGACAACGCTGGGCTTTATAATGTTGTTCACCTGTCTCCAAAGAGTCCTGCTTATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAACGTATAACCGCTGCACAGGCTTTAGAACATGAGTATTTTAAAATCGAACCACTACCTGGGCGAAATGCACTCGTACCCTGCCAACCCGGAGAGAAAATTGTGAATTATCCTTCACGTCCAGTGGACACAACCACAGATTTTGAAGGGACAACCAATCTTCAACCTTCACAACCGGTTTCGTCTGGAACAGCAGTTTCTGGCAACATGCCAGGCGCCCATGTGTCAAGTAGACCTGTCCATCGCCCAATGAATGTTGTTGGCATGCAAAGGTGTTGCTGCGCAGGCCCATCAGCAGCAACAGTTGAGAAGGAAAGACCAAGGAATGGGGATGCCAGGATACCCTCCCCAGCAGAAGTCACGGCGTTTATAAGGTTTTGCTGGCAGAAATCAAGCGAGGGTAGACTGAGGACAACATATTG 1418 0.4471 MGDGIVGSSGNRGNPHNSNSSSNSGNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSPTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQPGEKIVNYPSRPVDTTTDFEGTTNLQPSQPVSSGTAVSGNMPGAHVSSRPVHRPMNVVGMQRCCCAGPSAATVEKERPRNGDARIPSPAEVTAFIRFCWQKSSEGRLRTTY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00130 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Bva05g00130 472 PANTHER CYCLIN-DEPENDENT KINASE E-1 24 430 - -
Bva05g00130 472 MobiDBLite consensus disorder prediction 10 29 - -
Bva05g00130 472 Pfam Protein kinase domain 36 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00130 472 MobiDBLite consensus disorder prediction 381 411 - -
Bva05g00130 472 SMART serkin_6 36 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00130 472 MobiDBLite consensus disorder prediction 381 403 - -
Bva05g00130 472 Gene3D Transferase(Phosphotransferase) domain 1 119 359 - -
Bva05g00130 472 PANTHER CELL DIVISION PROTEIN KINASE 24 430 - -
Bva05g00130 472 SUPERFAMILY Protein kinase-like (PK-like) 31 347 IPR011009 -
Bva05g00130 472 ProSitePatterns Protein kinases ATP-binding region signature. 42 69 IPR017441 GO:0005524
Bva05g00130 472 CDD STKc_CDK8_like 35 346 - -
Bva05g00130 472 ProSiteProfiles Protein kinase domain profile. 36 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva05g00130 472 Gene3D Phosphorylase Kinase; domain 1 14 118 - -
Bva05g00130 472 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00130 Bva-Chr5 644803 651296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00130 29 424 Core Cell Cycle Gene Families AT5G63610 82.116 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Bva05g00130 Pkinase 1.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00130 K02208 - gmx:100813433 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00130 05 644803 651296 Bva05g00130 05 644803 651296 ECH
Bva05g00130 05 644803 651296 Bva06g01641 06 11568736 11574990 ECH