Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00103 ATGGTAATTAAAGAGATGAGAAGGAAAAAGCATTACAGAGGAGTAAGACAAAGACCATGGGGGAAATGGGCAGCTGAAATACGTTATCCCAAGAAAGCTGCCCGAGTGTGGTTGGGCACTTTTGACACAGCTGAGGATGCAGCCATGGGATACGACAAAGCAGCCCTTAAGTTCAAAGGCACAAAAGCAAAGCTTAATTTTCCCGAACGAGTCCAAGGCCAACTTAGTATTATTGCCTATGATCAATTAACGGTACTGCAGGATGCTGATTCCAGAAACAAAAACGCCTTTGGTTTCCCCCCTTCGTGTCTGGCTAGCTCCTTTCCAGCAATGATGCGGAACTTCCTTATTACGCATCTCATCTCTTCAATCAACACCAACACCCTTTGCTTCCCAATTTCCCACTACCTTGTCTTCGTCATCATCAACCACATCACCACCCGCAACAACAACGTGGCCACGGTGATCAAATA 473 0.4588 MVIKEMRRKKHYRGVRQRPWGKWAAEIRYPKKAARVWLGTFDTAEDAAMGYDKAALKFKGTKAKLNFPERVQGQLSIIAYDQLTVLQDADSRNKNAFGFPPSCLASSFPAMMRNFLITHLISSINTNTLCFPISHYLVFVIINHITTRNNNVATVIK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00103 157 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Bva05g00103 157 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Bva05g00103 157 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Bva05g00103 157 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Bva05g00103 157 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
Bva05g00103 157 PANTHER DNA-BINDING DOMAIN 6 87 IPR044808 GO:0003700|GO:0009873
Bva05g00103 157 CDD AP2 10 69 IPR001471 GO:0003700|GO:0006355
Bva05g00103 157 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Bva05g00103 157 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 6 87 - -
Bva05g00103 157 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00103 Bva-Chr5 522496 523054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00103 4 73 AP2-EREBP Transcription Factor Family AT5G13330 82.857 9.68e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva05g00103 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00103 - - tcc:18608834 142.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00103 05 522496 523054 Bva05g00103 05 522496 523054 ECH
Bva05g00103 05 522496 523054 Bva06g01576 06 11276684 11279055 ECH
Bva05g00103 05 522496 523054 Bva05g00184 05 893342 894587 ECH
Bva05g00103 05 522496 523054 Bva03g00221 03 1348640 1350521 ECH
Bva05g00103 05 522496 523054 Bva04g01911 04 19438822 19440844 ECH
Bva05g00103 05 522496 523054 Bva10g01119 10 8040342 8041830 ECH