Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00102 ATGGACTTAAAAAGTTTGTCCTCATCGTCATACTTCTCTGAAgatattttctcttctaaaGAGAGGCAGGTTGGATCATGGGAAGCAGATAAGCATCCCAAATTTTATGCCTCAGAGAAATCTATTGCATCATCATTTATGGAGAGACTTATGCCAGGGGAATATCAGACCGGAAATTTCCTTGAACATCCTGAGTCTTTCCTACCTCAAGACCAGAAAGCAAATCATGGCGTAAATGGGCTTTCACTAGGAACAGGTAGCACATGCAGTCATTCCTTGACCTCACTAAGTCATGTGAATTTTGATCAAGGAACAAGATCTAGTTTGAACACACAACCTGAATTCAGTTTTTGGAAAAGCAACAAAGTTGATCTAAATGATACTCAGTATGAAAGTAGTCTTTTCTCGAGTTCTCTCTCAGAGTTGTTTAGCAGAAAGTTGAGATTATCTGCAAATAATGATCTATACGGCCATTCGGTGGATACCATAGCATCCCACTATGAGGAAGAGGAACTTGTTCAGGCCCTTGAAGAACTTGAGGCTCAAACTATTGGAAATCTGCTCCCTAATGATGATGATTTGCTTTCTGGATTGACGAATGGATTTGATCGTGTCATCCAAGCCAATGGTGGGAATGACATGGAGGAATTAGACCTTTTTAGCAGTATTGGAGGGATGGAAATGGGAGATGATATTTCATCTTCTGGACTAAAGAATTCTGAATTTGCTGGAGCAGTTTGTGACAGTCAACTAGCGGCATGTAGTGACCCAGTCGCAGGAGAACCCCCTTCTAGAACCTTATTTGTCAGAAATATTGATAGCGATGCCGAAGATTCTGAGTTAAAATCACTTTTTGAGCAATATGGAGATATTCGCACTCTTTATGCAGCCTGCAAGCATCGTGGATTTGTTATGATCTCATATTATGATATTAGAGCTGCCCAGGATGCAAAGAGAGCACTTCAGAATAGACCATTAAGGGGCAGGAAACTTGATATTCATTATTCAATTCCAAAGGACAATTCTTCAGAGAAAGATATCGATCTGGGCACGCTTGTGGTGTTTAGTCTTGATTCCCCTGTTTCAAATGACGAACTTTGCCATATATTTGGTGTCTATGGAGAAATCAAGGAGATCGGTGATATCCCACAAAAGCGACATCAAAAGTTCATAGAATTTTATGATGTTAGAGCAGCAGAGGCTGCTCTTGGCGCCTTAAACGGAAGCGACATTTCTGGGAAGAGGATAAAGGTTGAGCCAAGCCTACGTGGAGCTGCAAAAAGATGTATGATGCAACAGATCCATCCAGAATTAGAGCAGGAAAAATCTGAACTTTATATGCATCAGAGCAGCCCTCCTCTTAAGTCACCTACCAGCTTCCCTGGTCCAGGTTTGCTTGGGATTATTACATCTGGTCCTATGGGTGATGGAAGAGTTCTGGGTGTTGAGCCTGTTATGCGAGCTTCATCCCTACCCACTGCGTTTACTCATGGGATGTCTTCAAGTCTTCCTAACACCTTACCCTCTCTGGTCAGCGTTAAATCAGTTGCCAACCAATGTGGAATAATAACTGAATCTAATTCACAAGGgcaattaaaagatattcaaCCCACATCGACTTTTCATCCTTATTCTCTCCTTGAAAATCGTGATGGTTTCACTAATGGTGTCCACTTCAGTTCTCCTGAGGTGGCTGCAAACATCAACGTCGAAACAAAGGAAAGAGCGGATAACATGCACTTTTGTCATGTAAACTCCAATGGGCACTCCATGGGACTCAATGAACGTGTTTTTAAATCTGCTGCTGCTGGTAGTGGGAGATATCATCTTCTTGGCCAGAATTACAGATGGAGCAATTCTTTTCGTTCTCCATCTCCCCAACCTTCTGGAATGATGTGGCCAAATTCACCATCGTATGCCAGTGGAATTTGTGCAGCCCATCCCTTGCCGAGATTGCATGGACTTCCTAGGTCGCCATGTCATGTAATGGGCACTGTTTTACCCATAAATAACCAACACGTGGGATCAGCCCCTGCAGTTAACCCTCCTTTTTGGGACAGACAACATACCTATGCAGGAAAATCCCCTGAAACTTCTGGTTTCTATCCTGGCTCTCTTGGGAATATGCCATTTTCCAGTAATACCCCAAATCGtgttgattttgtttctcatAGTATGTTCCCTTTTGTTGGTGGAAAGTATGTTGACCTTCCAGTTCACCCCAAGAATGTTGGATTCCAATCCCATAACCAAAATCATATGATTTTTCCTGGTAAAAACCATATGATTCCGATGATTAATTCATTTGACACTAATCACAATGACCGTGCTAGAAGCCGTAGAAATGAAGGTGGGTCAAAGCAAGCTGACAACACGAAACAGTATGAACTTGATATTGACCGTATAAAGAGGGGCGAAGATAATCGAACCACACTTATGATAAAGAACATTCCTAACAAGTATACTTCCAAGATGCTACTGGCTGCAATTGACGAGAGCCATAAAGGaacttatgattttatttatctgcCAATCGATTTCAAGAATAAATGCAACGTTGGATATGCATTCATCAACATGACTAGTCCTAGCTTGATTATACCGTTCTATCAGGCTTTTAACGGGAAAAAGTGGGAGAAATTCAACAGTGAGAAGGTGGCATCCCTAGCATATGCTCGCATACAAGGGAAAGCAGCACTTATTGCCCATTTCCAAAATTCAAGCTTGATGAATGAGGACAAGCGCTGCAGGCCCATCCTCTTCAATACAGATGGCCCTAATGCAGGTGATCAGGTCCCTTTCCCAATGGGTGTCAACGTTCGCAACAGACTTGCAAGAGGGAGAAACAATACCCAGGAGGATAACCCTCAAGGCAGTCCACCTACTTA 2888 0.4159 MDLKSLSSSSYFSEDIFSSKERQVGSWEADKHPKFYASEKSIASSFMERLMPGEYQTGNFLEHPESFLPQDQKANHGVNGLSLGTGSTCSHSLTSLSHVNFDQGTRSSLNTQPEFSFWKSNKVDLNDTQYESSLFSSSLSELFSRKLRLSANNDLYGHSVDTIASHYEEEELVQALEELEAQTIGNLLPNDDDLLSGLTNGFDRVIQANGGNDMEELDLFSSIGGMEMGDDISSSGLKNSEFAGAVCDSQLAACSDPVAGEPPSRTLFVRNIDSDAEDSELKSLFEQYGDIRTLYAACKHRGFVMISYYDIRAAQDAKRALQNRPLRGRKLDIHYSIPKDNSSEKDIDLGTLVVFSLDSPVSNDELCHIFGVYGEIKEIGDIPQKRHQKFIEFYDVRAAEAALGALNGSDISGKRIKVEPSLRGAAKRCMMQQIHPELEQEKSELYMHQSSPPLKSPTSFPGPGLLGIITSGPMGDGRVLGVEPVMRASSLPTAFTHGMSSSLPNTLPSLVSVKSVANQCGIITESNSQGQLKDIQPTSTFHPYSLLENRDGFTNGVHFSSPEVAANINVETKERADNMHFCHVNSNGHSMGLNERVFKSAAAGSGRYHLLGQNYRWSNSFRSPSPQPSGMMWPNSPSYASGICAAHPLPRLHGLPRSPCHVMGTVLPINNQHVGSAPAVNPPFWDRQHTYAGKSPETSGFYPGSLGNMPFSSNTPNRVDFVSHSMFPFVGGKYVDLPVHPKNVGFQSHNQNHMIFPGKNHMIPMINSFDTNHNDRARSRRNEGGSKQADNTKQYELDIDRIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDESHKGTYDFIYLPIDFKNKCNVGYAFINMTSPSLIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQVPFPMGVNVRNRLARGRNNTQEDNPQGSPPT 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00102 962 SUPERFAMILY RNA-binding domain, RBD 261 422 IPR035979 GO:0003676
Bva05g00102 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 331 IPR000504 GO:0003723
Bva05g00102 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 417 IPR000504 GO:0003723
Bva05g00102 962 PANTHER PROTEIN MEI2-LIKE 4 2 960 - -
Bva05g00102 962 MobiDBLite consensus disorder prediction 773 792 - -
Bva05g00102 962 CDD RRM3_MEI2_like 812 897 IPR034454 -
Bva05g00102 962 CDD RRM1_MEI2_like 264 340 IPR034453 -
Bva05g00102 962 Gene3D - 255 348 IPR012677 -
Bva05g00102 962 SMART rrm1_1 351 419 IPR000504 GO:0003723
Bva05g00102 962 SMART rrm1_1 811 887 IPR000504 GO:0003723
Bva05g00102 962 SMART rrm1_1 266 334 IPR000504 GO:0003723
Bva05g00102 962 MobiDBLite consensus disorder prediction 769 792 - -
Bva05g00102 962 SUPERFAMILY RNA-binding domain, RBD 811 896 IPR035979 GO:0003676
Bva05g00102 962 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 960 - -
Bva05g00102 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 350 423 IPR000504 GO:0003723
Bva05g00102 962 Gene3D - 349 446 IPR012677 -
Bva05g00102 962 Pfam RNA recognition motif 2 809 905 IPR007201 -
Bva05g00102 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 338 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00102 Bva-Chr5 514464 521271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00102 266 423 Eukaryotic Initiation Factors Gene Family AT4G34110 26.190 6.68e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00102 - - qsu:111984371 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00102 05 514464 521271 Bva05g00102 05 514464 521271 ECH