Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00100 ATGCAATTCGCAAAGCTCGACGACTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGCGaggtttgaaattttacaaAGGGTGTAGAAAATACACTGAAGGACTTGGGGAGGCATATGATGGGGACATTGCATTTGCAAGTGCCCTAGAAGCTTTTGGAGGAGGACATAATGACCCCATTAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACCATCGCCTTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGCTCACAGgTTGAGCATATGCTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTGCATGAGGTCAAGGAAGCACGGAAACGTTTTGACAAGGCCAGCCTTATTTACGACCAGGTTCGTGAAAAATTTCTGTCACTGAGAAAAGGCACAAAAACTGATGTAGCTGCTGCCCTAGAAGAGGAGCTGCATAATGCAAGATCTACATTTGAGCAAGCTCGATTTAATCTGGTTACTGCAATGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTCTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTCCGTTACTTCAAGCAGGGGTATGAGCTGTTGCACCAAATGGAGCCATATATTAACCAGgTCTTGACTTATGCCCAGCAATCAAGAGAAAGGTCCAACTATGAGCAAGCAGCTCTAAATGAAAGAATGCAAGAGTACAAACGGCAGGTTGATCGAGAAAGTAGGTGGTCTTCTAATGGTTCTAATGGCTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAAATGATAGAGGCGGTTATGCAATCAGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGCTATCTCTCAAAGCGCTCCTCAAACTTAAGAGGTGACTGGAAAAGGAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTGTATTACTATCGTAAACAGTGCAGCAAATCATCTGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCGGAGCTTGGTTCTGGACTCTTGGGTCGATGGCTGTCTTCTCATCATCATGGTGGGGTGCATGATGAGAAATCTGTAGCTCATCACACTGTGAACCTGCTTACATCAACCATCAAAGTTGATGCTGATCAATCAGATTTAAGGTTTTGCTTCAGGATCATTTCACCAACAAAGAATTATACTTTACAGGCAGAAAGTGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCGTCATTGCTAAGTTCTCAGATTCCTGAAAGGTGCTTGCCCGCAAGTCCAATGGGAAGTGGTCACCATAGGTCTGCCAGTGAAAGTAGCTCATTTGAAAGTTCAGATTTTGATCACTCTGCTGTTGAAGAATATACATCAGAGAGAAACCTTGCTTCCACACATCTGGAACGCCCCTCAAGGAGTTTGCAGCAACAGCGTTCCTGTATGAAAAGTGAGAAGCCAATTGATGTGTTGCAAAGAGTTTGTGGAAACGAGAAATGTGCTGATTGTGGAGCCCCTGAACCTGATTGGGCATCTTTAAATCTTGGTGTTCTTGTCTGCATTGAGTGTTCTGGTGTTCACCGGAACCTTGGTGTACACATATCAAAGGTAGACCGTACCACTGCAACCCCTTCATTTTTATGGTACatcatgaatatatttttggataaGGAAAGTTGGGTTGTTAGAATTCTTTGTATATG 1748 0.4245 MQFAKLDDSPMFRKQIQCMEESAESLRERGLKFYKGCRKYTEGLGEAYDGDIAFASALEAFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHEVKEARKRFDKASLIYDQVREKFLSLRKGTKTDVAAALEEELHNARSTFEQARFNLVTAMSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLGRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGHHRSASESSSFESSDFDHSAVEEYTSERNLASTHLERPSRSLQQQRSCMKSEKPIDVLQRVCGNEKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVDRTTATPSFLWYIMNIFLDKESWVVRILCI 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00100 582 Pfam PH domain 294 427 IPR001849 -
Bva05g00100 582 MobiDBLite consensus disorder prediction 441 461 - -
Bva05g00100 582 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Bva05g00100 582 PANTHER CENTAURIN/ARF 1 554 IPR045258 GO:0005096
Bva05g00100 582 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 554 - -
Bva05g00100 582 SMART PH_update 293 430 IPR001849 -
Bva05g00100 582 Coils Coil 151 171 - -
Bva05g00100 582 SUPERFAMILY ArfGap/RecO-like zinc finger 500 557 IPR037278 -
Bva05g00100 582 CDD PH_ACAP 295 432 - -
Bva05g00100 582 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 575 IPR001164 GO:0005096
Bva05g00100 582 SUPERFAMILY PH domain-like 207 427 - -
Bva05g00100 582 Pfam BAR domain of APPL family 6 233 - -
Bva05g00100 582 Gene3D Arf GTPase activating protein 486 569 IPR038508 -
Bva05g00100 582 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Bva05g00100 582 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Bva05g00100 582 MobiDBLite consensus disorder prediction 253 269 - -
Bva05g00100 582 MobiDBLite consensus disorder prediction 246 270 - -
Bva05g00100 582 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Bva05g00100 582 Coils Coil 118 138 - -
Bva05g00100 582 Pfam Putative GTPase activating protein for Arf 503 555 IPR001164 GO:0005096
Bva05g00100 582 Coils Coil 227 247 - -
Bva05g00100 582 SMART arf_gap_3 500 577 IPR001164 GO:0005096
Bva05g00100 582 Gene3D - 285 438 IPR011993 -
Bva05g00100 582 CDD ArfGap 503 552 - -
Bva05g00100 582 CDD BAR_SFC_plant 14 215 IPR035670 -
Bva05g00100 582 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Bva05g00100 582 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00100 Bva-Chr5 500106 506635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00100 499 552 C2H2 Transcription Factor Family AT3G07940 63.158 1.73e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00100 K12489 - gmx:100798227 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00100 05 500106 506635 Bva05g00100 05 500106 506635 ECH