Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00087 ATGGTTAGCCCAAAACGGCGAATCGGTGAGACCGTAGCCTGCGACTTCTGCACTCAAGAGACAGCGGTTCTGTATTGTAGGGCTGACTCGGCTAAGCTGTGTTTGTTGTGCGACCAACACGTTCACTCGGCTAACTCGCTCTCTCGCAAACATGTCCGTTCTCAGATCTGCGATAATTGTAACTCGGAGCCGGTCACTGTGCGCTGCAATGCTGACAATCTGGTACTATGTCAAGAATGCAATTGGGACGCTCACGGCACCTGCTCCGTCTCTGTCTCTCACCATCGCACCCCGGTTGAAGGATTCACCGGATGCCCTTCTGTCTCTCAGCTCGCGTCCATCTGGGGTTTCGATTTCgaggaaaagaaattcaaattggATCATTCATCCTCCTCGGTCACACCCCACTGGGATGATTATAGTTATCATTATAGTTATAATTCAAGGGATTTGCTTATGCCCGTGGAACCGTGGGTGTTTAAGTCGGATGGGATGCCTCTTCAAGACCTCATGGTTCCCAACCATAACTCCATGTGCTACGACGCATCCAAGAGGTACAGCTCGTCATGTGGGAAGCACAAGCATATCATATATAAGCAGTTGGTGGAATTGCGCAAGAGGGATTTGGTGGCGGGTGCCGGTGGGGGAGGTACTGCACCTCAAATTACCCCTGCTAATAATACAGAGAATTTGGTTCCTCAGGCTGAGACGGCCAATAATACTAGGGCGGGCTTCACTACACATGGGGGGGATGAGGAAGCATTTGGTTTGGAAAATGGAGTCGATCACTTTCTGGGGACTGCCGCTGGTTCCCAGCAACCATTGCAGCACCAGCACGCGCAAGTTCCTTCTTTGTTTATGATGCCCATGCAGCTGGATCTCAAAGAAAGCGGCCAAGTTATTAATCGAAACACTTTGTGCCACAGTAATCACAAGGGACAGGGTGTTCAGATATGGGATTTTCGTTCTGGACGACTCAGGTGTGATGAAGAATCTGGTGCACTTGATGCTGAAAGTCATGAAGGATTTATGACTAAAAATTTTGGTGAACTTATCAGAAAATCGTCCTTGAAAGATACAAAAATGTTGGAAGATTTATATGAGATGAATGTTGCTTATGAAGATACGGCGTCATATAACAACATCTCAAATAATCCAACAGCGAGTCAGGGGCCTGCAACATCTGAAAGCAATAACCTTCCAATAAGAAAGCAAACTAGCAGTTTGGCTCTTGGAAAGATCAAAGGTGCCAAAGATACGGAGTTGGGGGAACATTCTATACTAGTCAGAGATGAAAATGTGACAAAAACAGCAAGAACAAAGGCTGACATCGAGCTAATGGCACAGAACAGGGGCAATGCTATGCTCCGTtacaaggagaaaaagaaaactcgaAGGTATGAGAAGCAGATACGTTACGAGTCTAGGAAATTGAGAGCTGATACTCGGAAACGGGTCAAGGGCAGATTTGTAAAGGCCAAAGAGAGCGAAGCACCTAATACTtg 1505 0.4578 MVSPKRRIGETVACDFCTQETAVLYCRADSAKLCLLCDQHVHSANSLSRKHVRSQICDNCNSEPVTVRCNADNLVLCQECNWDAHGTCSVSVSHHRTPVEGFTGCPSVSQLASIWGFDFEEKKFKLDHSSSSVTPHWDDYSYHYSYNSRDLLMPVEPWVFKSDGMPLQDLMVPNHNSMCYDASKRYSSSCGKHKHIIYKQLVELRKRDLVAGAGGGGTAPQITPANNTENLVPQAETANNTRAGFTTHGGDEEAFGLENGVDHFLGTAAGSQQPLQHQHAQVPSLFMMPMQLDLKESGQVINRNTLCHSNHKGQGVQIWDFRSGRLRCDEESGALDAESHEGFMTKNFGELIRKSSLKDTKMLEDLYEMNVAYEDTASYNNISNNPTASQGPATSESNNLPIRKQTSSLALGKIKGAKDTELGEHSILVRDENVTKTARTKADIELMAQNRGNAMLRYKEKKKTRRYEKQIRYESRKLRADTRKRVKGRFVKAKESEAPNT 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00087 501 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 9 497 - -
Bva05g00087 501 SMART bboxneu5 9 56 IPR000315 GO:0008270
Bva05g00087 501 CDD Bbox1_BBX-like 13 56 - -
Bva05g00087 501 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bva05g00087 501 Pfam CCT motif 451 493 IPR010402 GO:0005515
Bva05g00087 501 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 9 497 - -
Bva05g00087 501 ProSiteProfiles CCT domain profile. 451 493 IPR010402 GO:0005515
Bva05g00087 501 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00087 Bva-Chr5 436593 440127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00087 12 495 C2C2-CO-like Transcription Factor Family AT2G33500 40.164 3.16e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva05g00087 CCT 2.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00087 - - minc:123214485 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00087 05 436593 440127 Bva05g00087 05 436593 440127 ECH