Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00082 ATGGAGAAAAAGGTTAGTTTCGTTAAGAATGGCGAGCTTAGATTGCCCCCTGGATTCCGGTTTCACCCCACGGACGAGGAACTCGTCGTGCAATACTTGAGGTGCAAAGTTTTTTGCCGTCCTCTGCCGGCCTCTATCATTCCAGACGTCGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTCGGAGCAAGAGAGATACTTCTTCAGCACTAGGGAGGCCAAATATCCGAATGGAAACAGGGGGAAGCCAACTCGTGGATCTAGAACCGATTGGATCATGCACGAATATCGCCTTCTTACCAACCAAACAAACACTTCAACTCAGGTGCCCGCGGAAAATTGGGTTCTGTGTCGTATATTTTTGAAGAGAAGAAGTGGTAAAAATGAAGACGACACATTGGGAATGGAAGATAAGAGCATCCGTAAAGTGAGCGAGTGTAGGCCAGTTTTCTACGATTTCTTAGCACAGAACACGAACGGAACAGAATTGACTAGTTCGTGCTCGGGCACTAGTGGAATCACAGCCGTCTCCTCCGATGAACGCGAAGAAGaaagtagtagtagtagtagtagtaataGCAAtactacttttctttcttttagaaCAACAAAACATTG 626 0.4361 MEKKVSFVKNGELRLPPGFRFHPTDEELVVQYLRCKVFCRPLPASIIPDVDVCKSDPWDLPGDSEQERYFFSTREAKYPNGNRGKPTRGSRTDWIMHEYRLLTNQTNTSTQVPAENWVLCRIFLKRRSGKNEDDTLGMEDKSIRKVSECRPVFYDFLAQNTNGTELTSSCSGTSGITAVSSDEREEESSSSSSSNSNTTFLSFRTTKH 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00082 208 MobiDBLite consensus disorder prediction 190 208 - -
Bva05g00082 208 MobiDBLite consensus disorder prediction 167 208 - -
Bva05g00082 208 ProSiteProfiles NAC domain profile. 15 159 IPR003441 GO:0003677|GO:0006355
Bva05g00082 208 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 6 84 - -
Bva05g00082 208 Gene3D NAC domain 85 129 IPR036093 GO:0003677|GO:0006355
Bva05g00082 208 Gene3D NAC domain 24 84 IPR036093 GO:0003677|GO:0006355
Bva05g00082 208 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 84 - -
Bva05g00082 208 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 83 200 - -
Bva05g00082 208 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 83 200 - -
Bva05g00082 208 Pfam No apical meristem (NAM) protein 16 85 IPR003441 GO:0003677|GO:0006355
Bva05g00082 208 SUPERFAMILY NAC domain 10 125 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00082 Bva-Chr5 414594 416081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00082 5 159 NAC Transcription Factor Family AT5G13180 47.867 2.33e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva05g00082 NAM 4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00082 - - zju:107417668 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00082 05 414594 416081 Bva05g00082 05 414594 416081 ECH
Bva05g00082 05 414594 416081 Bva06g01544 06 11078150 11079564 ECH
Bva05g00082 05 414594 416081 Bva03g00256 03 1558723 1560110 ECH
Bva05g00082 05 414594 416081 Bva04g01883 04 19276225 19277599 ECH