Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00062 ATGCCGCCCGTTTATGATATAGATTATCTATATCAAGAAGCTCAAACTCGGTGGCTGAAGCCTGCGGAAGTGCTGTACATTTTGCAGAATCATGACAAGTACCAGTTCACCCAAGAGCCCCTTCAACAGCCAACCAGTGGATCTTTGTTTCTAGTTAACAAAAGAGTCCTCCGTTTTTTTCGTAGAGATGGCCATAATTGGCGGAAGAAAAGAGACGGAAGAACTGTGGGAGAAGCACATGAGCGACTTAAGGTTGGAAACGTTGAAACCTTAAATTGTTACTATGCACATGGAGAGCAGAACCCCAGTTTTCAAAGACGGAGCTACTGGATGTTGGACCCGGCATATGAGCATATTGTTCTAGTACATTACAGAGAAACAAATGAGGAAAAACTCAGCTCTGGACCTGGCACACAATTATCACCAAGGCCCTCTTCTGCATTTAGTCAGAGCCCTAGTTCATATACTGCCCAGAATCCAGGATCAACATCCGTGTTTGGTGATTCATATGAACAACCATATCAAAGTTTCTCTAGTCCTGGATCTGTCGAAGTGACCTCTGATATAGCCatcaaaaacaatgaaatggATCAGTTGGATGGAACTGATGCAGAATCAGGATTTCCTAAAGAAATTGAGGTTACTCAAGCTTTGCGCCTACTGGAGGAGCAGTTAAGTTTGAATGAGGAcagattcaaaaatattgcttCCGTCTCCAGTGAGCATGAAAATCCATATGATTCAAACCCTCGGCAAAATGAAAGGGAGTTCTGTGAGCAAGACAAATCTATGGTTTGCAATGGACCAGATGATCATGGTCAAAGTTGTGATGGGTATACTGGCGGACATGGCGACAGGGGTGGATATTATGAAGAATTTCTTGACCGTGTTTGCTTTGATGGAAATGATGGAGATTTATCTTGGAAGGAGGTGCTGGAATCATTCCAGACTTCATCCATGGCCGAGCTACAAGACAAACATGTATACAAGCTGGATGGAATTGAAGATGAACTTTCTTCTTCAGGAAGAAATCTGATGGCCAGCCTGCAAAACAGTCATTGGGTTAACTTCAACAGTAACAATGCTGAAAATTCTTTCTTCTCACTTCCTCAAGAAATTGGTAGTGTCAAATTTCCTGCGCATTCTTCTACAGTAGAAATTCAAGAAGCTGATTCTGACTATTATGCAACATTttttgaccaaagccaaattggAGCGCCTCTGGGTGCAGATTCTGGCTTGACTGTTGCACAAACACAGAAGTTCACTATTAAGGAAGTATCCCCAGAATGGGGTTATGCCACAGAGACTACGAAGGTTATCATAGTCGGATCTTTTCTCTGTCATGCATCAAATTCTAAGTGGGCTTGTATGTTTGGCGATATTGAAGTCCCTGTGGAGATAATTCAGGATGGTGTAATCTGTTGTGAAGCTCCGTCCCACCTTCCTGGAAAGGTTATTCTGTGTATTACTTCTGCGAATCGGGATTCTTGTAGCGAAGTTAGAGAGTTTGAGTATCGCAGTAAGAGTAGTTGTGCTTTCTGCAATTCGGTGGAAGCAAAAGCCACTAGAAGTCCAGAAGAGCTGTTATTACTTGTTAGATTTGTGCAGATGCTCCTTTCTGATTCGTCTATAAAGAATGACACTGTAGAATCGGATAACCATCTGATAGGAAAATTGAAAGCTGATGACGCTCCGTGGAACCATATTATAGAGGCTCTTCTAGTTGGCGGCGGAACTTCATCTGGTACTGTTGATTGGCTTCTCGAAGAGCTTCTAAAGGATAAGTTGCAATTGTGGCTTTCTTCCAGGTGCCAAGATAGAGCTGAAGAAACAGACTGCTCTTTGTCCAAGAAAGAGCAGGGGATATTACACATGGCTGCTGGGTTGGGATTTGAGTGGGCTTTGCAGCCTATTGTCAGTTCTggtgtaaatataaattttcgtGACATTAATGGGTGGACCGCCCTACATTGGGCTGCACGTTTTGGAAgGGAGAAAATGGTTGCTTCACTCATAGCGTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCGGCCGGTAAAACTGCTGCATCTATTGCAGCCAGCAGTGGGCACAAGGGACTCGCAGGTTATCTTTCGGAGGTAGCTCTAACAAGCCATCTGTCTTCCCTCACACTAGAAGAAAGTGAGCTTTCTAAAGGTTCTGCCGAGCTTCAAGCAGAGTTAACCGTTAGCAGTGTCTCCAAGGAAAATCTTACCGTCAATGAGGATCAGCTTTCACTCAAAGATACCTTGGCTGCTGTCCGAAACGCAGCTCAGGCAGCTGCACGTATACTGGCTGCTTTTCGTGCACATTCTTTCAGAAAacggagagagagagaatctgCTGCAACTGCTGCTGCTGCCTTGTCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCCTCACATTACGGCAGAAAGTTGTGAAGATACAGGCTCATGTGAGAGGTTACCAGGTAAGGAAGTATTATAAAGTAATATGTTGGGCGGTTGGAATCTTGGACAAGGTTGTACTAAGATGGCGGAGGAAAGGAGTTGGTTTACGAGGTTTTCGGCATGACATAGAACCtattgatgaagatgaagaagaatatgAAGACATTCTCAAGCTGTTTCGCAAACAGAAGGTGGATGTAGAAATCGAGGAGGCTGTTTCACGAGTTCTGTCCATGGTCGATTCTCCAGATGCTCGTCATCAATATCATCGCGTGCTTGAGAAATATCGTCAAGCCAAGGCTGAATTTGGCAGCAGCAGTCGAGAAGCATTATCATCAACTTCTAGGGATGCTTCTACTATGGAAGACGACGATCTGTATCTATTTCCTTA 2876 0.4239 MPPVYDIDYLYQEAQTRWLKPAEVLYILQNHDKYQFTQEPLQQPTSGSLFLVNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNVETLNCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYRETNEEKLSSGPGTQLSPRPSSAFSQSPSSYTAQNPGSTSVFGDSYEQPYQSFSSPGSVEVTSDIAIKNNEMDQLDGTDAESGFPKEIEVTQALRLLEEQLSLNEDRFKNIASVSSEHENPYDSNPRQNEREFCEQDKSMVCNGPDDHGQSCDGYTGGHGDRGGYYEEFLDRVCFDGNDGDLSWKEVLESFQTSSMAELQDKHVYKLDGIEDELSSSGRNLMASLQNSHWVNFNSNNAENSFFSLPQEIGSVKFPAHSSTVEIQEADSDYYATFFDQSQIGAPLGADSGLTVAQTQKFTIKEVSPEWGYATETTKVIIVGSFLCHASNSKWACMFGDIEVPVEIIQDGVICCEAPSHLPGKVILCITSANRDSCSEVREFEYRSKSSCAFCNSVEAKATRSPEELLLLVRFVQMLLSDSSIKNDTVESDNHLIGKLKADDAPWNHIIEALLVGGGTSSGTVDWLLEELLKDKLQLWLSSRCQDRAEETDCSLSKKEQGILHMAAGLGFEWALQPIVSSGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPAGKTAASIAASSGHKGLAGYLSEVALTSHLSSLTLEESELSKGSAELQAELTVSSVSKENLTVNEDQLSLKDTLAAVRNAAQAAARILAAFRAHSFRKRRERESAATAAAALSIQKKYRGWKGRKDFLTLRQKVVKIQAHVRGYQVRKYYKVICWAVGILDKVVLRWRRKGVGLRGFRHDIEPIDEDEEEYEDILKLFRKQKVDVEIEEAVSRVLSMVDSPDARHQYHRVLEKYRQAKAEFGSSSREALSSTSRDASTMEDDDLYLFP 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00062 958 SUPERFAMILY E set domains 423 507 IPR014756 -
Bva05g00062 958 MobiDBLite consensus disorder prediction 931 958 - -
Bva05g00062 958 Gene3D - 533 717 IPR036770 -
Bva05g00062 958 SMART CG_1_2 10 128 IPR005559 GO:0003677
Bva05g00062 958 SMART iq_5 819 841 IPR000048 GO:0005515
Bva05g00062 958 SMART iq_5 796 818 IPR000048 GO:0005515
Bva05g00062 958 Pfam IQ calmodulin-binding motif 799 817 IPR000048 GO:0005515
Bva05g00062 958 Pfam IQ calmodulin-binding motif 822 841 IPR000048 GO:0005515
Bva05g00062 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 776 848 IPR027417 -
Bva05g00062 958 MobiDBLite consensus disorder prediction 130 182 - -
Bva05g00062 958 CDD IPT 423 508 - -
Bva05g00062 958 ProSiteProfiles IQ motif profile. 797 826 IPR000048 GO:0005515
Bva05g00062 958 ProSiteProfiles IQ motif profile. 820 844 IPR000048 GO:0005515
Bva05g00062 958 SMART ANK_2a 652 681 IPR002110 GO:0005515
Bva05g00062 958 SMART ANK_2a 691 720 IPR002110 GO:0005515
Bva05g00062 958 MobiDBLite consensus disorder prediction 131 182 - -
Bva05g00062 958 Pfam Ankyrin repeats (3 copies) 624 712 IPR002110 GO:0005515
Bva05g00062 958 Pfam CG-1 domain 13 126 IPR005559 GO:0003677
Bva05g00062 958 ProSiteProfiles Ankyrin repeat profile. 652 684 IPR002110 GO:0005515
Bva05g00062 958 Gene3D - 797 844 - -
Bva05g00062 958 Pfam IPT/TIG domain 423 506 IPR002909 -
Bva05g00062 958 ProSiteProfiles Ankyrin repeat region circular profile. 652 678 - -
Bva05g00062 958 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 798 953 - -
Bva05g00062 958 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 796 - -
Bva05g00062 958 Gene3D Immunoglobulins 417 512 IPR013783 -
Bva05g00062 958 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 798 953 - -
Bva05g00062 958 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 1 796 - -
Bva05g00062 958 SUPERFAMILY Ankyrin repeat 621 713 IPR036770 -
Bva05g00062 958 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00062 Bva-Chr5 316100 323776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00062 5 958 CAMTA Transcription Factor Family AT1G67310 51.704 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Bva05g00062 CG-1 5.4e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00062 K21596 - gmx:100786880 1269.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00062 05 316100 323776 Bva05g00062 05 316100 323776 ECH