Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00056 ATGGGAACGTGTTTGGAAAATTTGACACAAAGTGAGGAAGAACACATCTTCCGTAGCCGATATTCAGCTGTCCCAGTTCCTGAGAATGTGACATTGCCAGAATTTGTGCTGCATAATGCTGAATTATATGGCGGCAAGGTAGCATTTGTGGAGGCTGTGACTGGAAAAAGAATCACTTATAGTGAAGTGGTGAGAGACACAAAGAGGTTTTCAAAGGCTTTGAGGTTTCTTGGGCTGACAAAGGGAAATGTCGTCTTAGTAGTATTACCAAATATAGCAGAGTATGCCATTATTGCTTTGGGTATAATGGCTGCTGGGGGAGTGTTTTCGGGCGCAAATCCCATGGCACATGCCTCAGAAATTAAGAAGCAAGCAGAGGCTGCTGAtgccaaatatataattacaaatgATCCAACCTACGAaaagGTGAAAGGTTTAAGGCTACCTATCATTGTTGTAGCCGATGAGGCAATCGAAGATACGATGAATTGGAAAAAACTGCTAGAGGCAGCAGACGGGGCAGGAGATAAGTTGATCAACGAAACTGTCCAGCAGAATGATCTTTGTGCCATGCCTTTCTCATCAGGCACTACAGGGATGTCAAAGGGTGTAATGCTGACCCACCAAAATCTGGTAGCTAACCTTTGCTCCACACTCTTCGGTGTAGCGCCAGAAATGGTGGGTCAGGTCACTACACTAGGCCTAATCCCCTTCTTTCACATCTATGGTATCACTGGAATATGTTGTGCCGCTCTTAGGAACAAAGGGAAAGTGGTTGTGATGGGAAGATTTGAGTTGAGGACATTTCTGAATGCTTTGATCACACATGAGGTCATGTTTGCCCCAATCGTGCCACCAATCATTCTCAACTTGGTGAAAAACCCCATAGTTGATGAATTTGATCTCAGCAAACTCAAACTACAGGCTATTATGACTGCGGCTGCACCGCTTGCACCGGAGATCCTCACTGCCTTTGAAAATAAGTTCCCTGGCGTTGTCGTTCAAGAGGCTTATGGTCTAACTGAGCACAGCTGCATCACTCTAACTCATGTGCTTAAAGATTTTGGAAATGCAAAAAGAAGCTCGGTGGGATTCATCCTACCAAATTTAGAAGTCAAATTCATTGATCCTGAGACTGGCCGATCCCTCCCAAGGAACACACCTGGTGAACTCTGTGTCCGGAGCCAATGCGTAATGAAAGGTTACTATAAGAACGAGGAGGAGACTGCCCAGACTATTGGCAAGAATGGATGGCTTCATACGGGTGACATTGGTTTTatagatgatgatgataatgtaTTTATTGTTGACCGCATCAAGGAGTTGATTAAATACAAAGGCTTTCAAGTAGCTCCAGCTGAACTGGAGGCTATTCTTCTATCTCATCCTTCAGTTGAAGACGCAGCTGTTGTGCCGTTACCGAATGAAGAGGCAGGGGAGATTCCTGGTGCAAGTGTGGTGATAAGCCCAGGTGCAATAGAGAGTGAAGAAGACATTATCAAGTATGTTGCCTCCAACGTTGCGAATTACAAGAAAGTGCGGGTGCTACACTTTGTGAAAGCCATCCCAAAATCACCTTCAGGCAAAATTATGAGGAGGCTTATTAAGGAGAAGATGCTGGAAAACATGACACCATCACAAACCTCCGCCGCTAGCTACAGCCATTGCATTTGCTA 1676 0.4397 MGTCLENLTQSEEEHIFRSRYSAVPVPENVTLPEFVLHNAELYGGKVAFVEAVTGKRITYSEVVRDTKRFSKALRFLGLTKGNVVLVVLPNIAEYAIIALGIMAAGGVFSGANPMAHASEIKKQAEAADAKYIITNDPTYEKVKGLRLPIIVVADEAIEDTMNWKKLLEAADGAGDKLINETVQQNDLCAMPFSSGTTGMSKGVMLTHQNLVANLCSTLFGVAPEMVGQVTTLGLIPFFHIYGITGICCAALRNKGKVVVMGRFELRTFLNALITHEVMFAPIVPPIILNLVKNPIVDEFDLSKLKLQAIMTAAAPLAPEILTAFENKFPGVVVQEAYGLTEHSCITLTHVLKDFGNAKRSSVGFILPNLEVKFIDPETGRSLPRNTPGELCVRSQCVMKGYYKNEEETAQTIGKNGWLHTGDIGFIDDDDNVFIVDRIKELIKYKGFQVAPAELEAILLSHPSVEDAAVVPLPNEEAGEIPGASVVISPGAIESEEDIIKYVASNVANYKKVRVLHFVKAIPKSPSGKIMRRLIKEKMLENMTPSQTSAASYSHCIC 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00056 558 CDD 4CL 26 533 - -
Bva05g00056 558 Pfam AMP-binding enzyme 38 445 IPR000873 -
Bva05g00056 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 542 - -
Bva05g00056 558 SUPERFAMILY Acetyl-CoA synthetase-like 8 541 - -
Bva05g00056 558 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Bva05g00056 558 Gene3D - 441 543 IPR045851 -
Bva05g00056 558 Gene3D - 14 440 IPR042099 -
Bva05g00056 558 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 9 542 - -
Bva05g00056 558 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00056 Bva-Chr5 288604 290991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00056 5 540 Monolignol Biosynthesis Gene Families AT1G62940 73.234 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00056 K01904 - gmx:100814237 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00056 05 288604 290991 Bva05g00056 05 288604 290991 ECH