Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00055 ATGGAGTGGAATGCAAAATCTCCCTCGCAGTGGGACTGGGAACACCTATTCTTAAATGCAAAAGCAACCGAAACTCCTACGTCACCACAAATAGACTGGAGTTCTGAAACAGATCGAGAAATCAATGTCAGGTTGTTCTATTCTTGTGGAGGTAGTGGTTGTTCTGGGTCTGATATAATACACGCTTCTTCATCAAGGAGTTCAAAATCTACTTCCATCAATTCATCATCAAATTGGGAAAgcaaaatatcattattcaACCTTGAAGGCTCCCAAGAAGATTCTAGTGGTAAGAATGAAATGTCAAAAGACGACCCTACTGGAACTTCTCCTACACTTGAGCCTTCTTCTGTATCTGGTGACCCTTTGCTCAGTCTAAAGCTTGGTAAACGGCTGTACTATGAAGATGTTTGCCCCGGGAGTGATACCAAGAATCTGTCCTTTTCTGGGGTTCCACTGCCATCTTTGAGTACCGGAAAGAAAGGCAAGTCCAACAGTCAGAACCCACTTCCTCCACGCTGCCAGGTTCAGGGCTGTAACCTTGACCTCACATTAGCTAAAGGTTATCATCGTAAACATAGAGTCTGTGAAAGTCATTCCAAATCCCCCAAGGTGCTTGTAAATGGTCTGGAACGTCGTTTTTGCCAACAATGTAGCAGGTTCCATCGTCTGTCagaatttgatgataaaaagaGAAGCTGCCGACGACGTCTTTCTGATCACAATGCTAGGCGTCGCAAGCCTCATCCTGAAATAACTCAGCTAAATCCATCAGCTTTTTCTTTGTCAGAAGatgATGGGAGGCGACAGATGAGGCCATTTCGTCGTTCAAGGGCTGTTACAAATTTTACCTGGCAAGATGCACAAAGCAGTGAGTTTCCCCAGGTAAAAGAGTTTCTCATGAAGCCTGCAAGAGCAGGAGCTAACAACGGGCGAGTGCTTCAGCCCTACAATGAAATGCCAAGTACTTTCACTATGCATTCGAATGATTCCGGTGGCCTTTCTACATCTAAAGGCGTAGCAGCCAAGACTATCAATCCAGGTGTAGATGACTCCATTACCTCATCTGATCTGAATGCTGCACCGGATTTTCACCGTGCTCTCTCTCTTCTGTCATCCTGTTCTTGGGGCTCCTATGAGACAAAACCAGTTTCTCTAGAACACTCCAATCATACAACTCATACTAGTATGACTCAGCTCACAACAAACTCAATCGTGCAGCGCTTGCCTGTTGCTTCCCCAGGATATTGGGAGACTGGTCAACAATCCACTGATTCCCGCATGTGTATTTCATACTCAGATTGTGATAATGGCAATCGGTTTCAGTTTCAAGACTTCCAACTGTTCAAAACACCCTATAAGTCCGGTTTTCCTTGCAACCAGTTAGATTA 1391 0.4378 MEWNAKSPSQWDWEHLFLNAKATETPTSPQIDWSSETDREINVRLFYSCGGSGCSGSDIIHASSSRSSKSTSINSSSNWESKISLFNLEGSQEDSSGKNEMSKDDPTGTSPTLEPSSVSGDPLLSLKLGKRLYYEDVCPGSDTKNLSFSGVPLPSLSTGKKGKSNSQNPLPPRCQVQGCNLDLTLAKGYHRKHRVCESHSKSPKVLVNGLERRFCQQCSRFHRLSEFDDKKRSCRRRLSDHNARRRKPHPEITQLNPSAFSLSEDDGRRQMRPFRRSRAVTNFTWQDAQSSEFPQVKEFLMKPARAGANNGRVLQPYNEMPSTFTMHSNDSGGLSTSKGVAAKTINPGVDDSITSSDLNAAPDFHRALSLLSSCSWGSYETKPVSLEHSNHTTHTSMTQLTTNSIVQRLPVASPGYWETGQQSTDSRMCISYSDCDNGNRFQFQDFQLFKTPYKSGFPCNQLD 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00055 463 SUPERFAMILY SBT domain 172 253 IPR036893 GO:0003677|GO:0005634
Bva05g00055 463 MobiDBLite consensus disorder prediction 102 119 - -
Bva05g00055 463 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 24 462 - -
Bva05g00055 463 MobiDBLite consensus disorder prediction 90 121 - -
Bva05g00055 463 Pfam SBP domain 174 247 IPR004333 GO:0003677
Bva05g00055 463 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Bva05g00055 463 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Bva05g00055 463 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 462 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00055 Bva-Chr5 277410 281056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00055 1 418 SBP-box Gene Family AT5G43270 38.249 4.38e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva05g00055 SBP 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00055 - - gmx:100781289 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00055 05 277410 281056 Bva05g00055 05 277410 281056 ECH