Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00040 ATGAATAGACTGACTTTCAGAGGGTCAGTTTCTCAAAAGCTCCTCGCACCAATGGCACATTTCAGACTCTTAGCACTATTTCATAAAAGGAGACAAAGGATTAAACACATTAAATCTGAAATTCCAATTCCTCTCTCTCAATCTGCTCCATTTCTCCCTACTTCgGCGAGTAAGGAGATAAGCAGCAATACAGTCGCCATGGTGAAGTATTCCAGGGAACCCAACAATCCTACAAAGTCTTGCAAGGCAAGAGGCTCCGACCTCCGAGTTCATTTTAAGAACACTAGGGAGACAGCGCATGCCATCCGTAAGTTACCTTTGGCAAAGGCTAAGAGATATTTGGAAGATGTCATCGCCCACAAACAGGCCATTCCCTTCCGAAGGTTCTGTGGTGGTGTTGGGAGAACAGCTCAGGCAAAGAATAGACATTCTAATGGACAAGGACGGTGGCCTGTTAAATCTGCTAAGTTCATTCTCGATCTGCTCAAGAATGCGGAGAGTAACGCCGAAGTGAAAGGTTTGGATGTTGATACTCTCGTCATTACTCATATTCAAGTTAATCAAGCACAGAAGCAAAGACGTCGTACCTACCGAGCCCATGGAAGAATCAACCCCTATATGTCATCTCCCTGCCACATAGAGCTAATATTGTCAGAAAAGGAAGAACCTGTGCCGAAGGAGCCTGAGACCCAGTTGGCAACAAGCAAAAAGAAGTCCCAGGCTCTTCGAAGTGGTGCTTCATCATG 746 0.4531 MNRLTFRGSVSQKLLAPMAHFRLLALFHKRRQRIKHIKSEIPIPLSQSAPFLPTSASKEISSNTVAMVKYSREPNNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVIAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDTLVITHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVPKEPETQLATSKKKSQALRSGASS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00040 248 Pfam Ribosomal protein L22p/L17e 83 218 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bva05g00040 248 ProSitePatterns Ribosomal protein L22 signature. 193 217 IPR018260 GO:0003735|GO:0005840|GO:0006412
Bva05g00040 248 MobiDBLite consensus disorder prediction 221 248 - -
Bva05g00040 248 Hamap 50S ribosomal protein L22 [rplV]. 66 220 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bva05g00040 248 SUPERFAMILY Ribosomal protein L22 67 220 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bva05g00040 248 MobiDBLite consensus disorder prediction 234 248 - -
Bva05g00040 248 TIGRFAM uL22_arch_euk: ribosomal protein uL22 70 220 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bva05g00040 248 PANTHER 60S RIBOSOMAL PROTEIN L17 67 248 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bva05g00040 248 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 67 248 - -
Bva05g00040 248 CDD Ribosomal_L22 81 217 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bva05g00040 248 Gene3D Ribosomal protein L22/L17 67 247 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00040 Bva-Chr5 198105 202134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00040 67 248 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.264 4.64e-115 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00040 K02880 - csv:101211875 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00040 05 198105 202134 Bva05g00040 05 198105 202134 ECH