Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00035 ATGATGGATGTTTCCGAGGTTGAAGAAAATCTGTTCGCAATAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTTTCTGCTATATATTGTAAAGTATTGTCAATATTTCCATCCTTGGAAGCAGCTAGGCCTAGGAGCAAATCTGGCATTCAGGCATTATGTTCATTGCATGTGGCCTTAGAGAAGGCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCCGTTCTTCTGAAATTTGAGAAGGCTAAATGTGCACTTGAAGATAGTCTGAAGCGGGTGGAAGATATTGTTCCACAATCTATTGGTTGTCAGATTCAAGGGATTGTGAATGAACTCAAGAGTTCAGCGTTTGCACTTGATCCATTGGAGAAGCAAATTGGTGACAATTTAATTGCATTACTCCAGCAGGGAAGGAAATTCAGTGACTCTAATGATAGTAGTGAGCTTGAATGTTTTCACCAGGCTGCTACTAGACTTGGGATAACATCTTCTAGAACAGCTCTTTCTGAAAGGAGAGCTCTCAAGAAACTCATAGAAAGAGCTCGTAGTGAGGAAGACAAACGGAAGGAATCAATTGTTGCATATCTTTCACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAATTTTCAGATGATAATGATTCACAGGGCTCTGCACCTTGTTCTCCCACTGTACAGGGATCTGTTGAGGATGGTATTACTGTTGGTCACTGTCATGCTTTTGACAGACAGCTTTCAAAACTTAGttcctttaattttaagatgcCACTTCCACCTGAAGAGTTGAGGTGTCCAATATCCCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGTCAAACATATGAAAGGGTTTGCATAGAAAAATGGTTCAGTGATGGGCACAACACCTGCCCAAAGACTCGACAGAAACTTTCACACCTTTCTTTGACTCCTAATCACTGCGTTAAGGGTCTTGTTGCTTGTTGGTGTGAACAGAATGGAGTTGCTGTTCCTGGGGGCCCTCCTGAATCACTTGACCTTAACTATTGGAGATTGGCATTATCTGAGTCTGAGTCAACAAATTCTAGATCTGTTAACAGTGTCAGTTCTTGCAAGTTGAAAGGTGTCAAAGTGGTTCCTGTAGAAGAGAGTGGTATTTCAGAGGAAACTGGAGGAGATGGAGCCGGGAGTGTGTCTGCACAAGAGGAAGATAACAAGCAGCATCTTAGTTTTCTGAAAGTCTTGACTGAAGGGAACAATTGGAAGAGAAAATGTGTAGTGGTAGAACAGTTAAGGCTGTTACtaagagatgatgaagaagcaaGAATTTTTATGGGCGCTAATGGATTTATTGAAGCACTTTTGCAGTTTCTACAATCAGCTATGCACGAAGGGAATGCTATGGCTCAGGAAAGCGGAGCATTGGCTCTCTTCAACCTTGCTGTGAATAACAACAGaAATAAGGAAATTATGTTAGCAGAAGGAGTATTGTCATTGTTGGAGGAAATGATTTCTAACTCCAGCTCTTATGATTGTGCAACGGCCCTGTATCTGAATCTCTCCTGCCTTGAAGAAGCCAAGCCTATGATCGGCATGAGTCAGGCTGTCCAGTTCCTAAATCAGACTCTTCAGGCTCACACTGAAGTCCAATGCAAGCAAGATGCCCTCCATGCACTCTACAATCTCTCCACTGCTCCCTCCAATATTCCCAACCTCGTTTCGTGTGGCATCATTAGTGGCCTTCAATCCCTTCTTTCAGGCCAAGATTGCATGTGGACAGAAAAATGCATAGctgttttgataaatttggcTGCTTCTCAATTGGGAAAGGAGGAAATGATATCAACTCCTGGGCTAATAAGTGCATTGGCTGGGATATTAGACACTGGTGAGCTGCTAGAGCAGGAGCAAGCCGCCTCTTGtctcttaattttatgtaaGGGGAATGACAAATGTAGTCAGATGGTCCTCCAAGAAGGGGTAATACCTGCATTAGTGTCAATGTCAGTGAATGGGACttcaagaggaagagaaaaagctCAGAAATTGTTGATGCTGTTCCGGGAGCAGAGACAACGAGACCATTCACCTGCTGAGACACGTCAGCGCTCACCTGAAACTAGTGATGTATCTATGCCTCCACCAGAAACGAAACCATTATGTAAATCAATGTCTAGAAGGAAGGTGGGGAAAGCTTTTAGCTTTCTGTGGAAAACTAAGGGCTATTCTGTTTACCAGTGTTA 2270 0.4115 MMDVSEVEENLFAISDAKLHGEMCKALSAIYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIQGIVNELKSSAFALDPLEKQIGDNLIALLQQGRKFSDSNDSSELECFHQAATRLGITSSRTALSERRALKKLIERARSEEDKRKESIVAYLSHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSVEDGITVGHCHAFDRQLSKLSSFNFKMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNTCPKTRQKLSHLSLTPNHCVKGLVACWCEQNGVAVPGGPPESLDLNYWRLALSESESTNSRSVNSVSSCKLKGVKVVPVEESGISEETGGDGAGSVSAQEEDNKQHLSFLKVLTEGNNWKRKCVVVEQLRLLLRDDEEARIFMGANGFIEALLQFLQSAMHEGNAMAQESGALALFNLAVNNNRNKEIMLAEGVLSLLEEMISNSSSYDCATALYLNLSCLEEAKPMIGMSQAVQFLNQTLQAHTEVQCKQDALHALYNLSTAPSNIPNLVSCGIISGLQSLLSGQDCMWTEKCIAVLINLAASQLGKEEMISTPGLISALAGILDTGELLEQEQAASCLLILCKGNDKCSQMVLQEGVIPALVSMSVNGTSRGREKAQKLLMLFREQRQRDHSPAETRQRSPETSDVSMPPPETKPLCKSMSRRKVGKAFSFLWKTKGYSVYQC 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00035 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 504 IPR000225 GO:0005515
Bva05g00035 756 PANTHER U BOX DOMAIN-CONTAINING 2 740 - -
Bva05g00035 756 SUPERFAMILY RING/U-box 265 348 - -
Bva05g00035 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 346 IPR013083 -
Bva05g00035 756 Gene3D - 409 545 IPR011989 -
Bva05g00035 756 Pfam U-box domain 273 342 IPR003613 GO:0004842|GO:0016567
Bva05g00035 756 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Bva05g00035 756 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 740 - -
Bva05g00035 756 SUPERFAMILY ARM repeat 420 698 IPR016024 -
Bva05g00035 756 MobiDBLite consensus disorder prediction 700 730 - -
Bva05g00035 756 CDD RING-Ubox_PUB 276 318 IPR045210 -
Bva05g00035 756 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Bva05g00035 756 Gene3D - 546 695 IPR011989 -
Bva05g00035 756 SMART arm_5 532 573 IPR000225 GO:0005515
Bva05g00035 756 SMART arm_5 574 614 IPR000225 GO:0005515
Bva05g00035 756 SMART arm_5 615 656 IPR000225 GO:0005515
Bva05g00035 756 SMART arm_5 447 491 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00035 Bva-Chr5 175052 180413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00035 2 755 U-box Gene Family AT1G24330 66.195 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00035 - - gmx:100804344 1224.92