Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00021 ATGGACTCTTCTCCACGACGCGATGCTTTTCCTGCTGGTCTGCGAGTTCTCGTCGTTGACGACGATCCAACGTGGCTTAGGATCCTTGAAAAGATGCTCAAGAAGTGCTCTTATCAAGTGACTACATGTTGTCTAGCAAGAGAGGCTCTAAACTTGCTTCGTGAAAGGAAAGATGGGTATGACATTGTGATCAGTGATGTAAACATGCCTGATATGGATGGCTTTAAGCTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTTGATGGAGAAACAAGTAGGGTAATGAACGGTGTTCAACATGGGGCATGTGATTATCTCCTTAAGCCCATAAGAATGAAAGAACTGCGTAATATATGGCAACATGTCTTTAGGAAAAGGATACACGAGGCAAGAGAATTTGAAAGTCTCGAAGGCATAGGCATTCACTTGATCAGAAATGGATTGAATCAGTCTGACGATGGCAGCTTGTTCTGTCTGGAAGATATAATGACCTCCcctgagaaaagaaatttaaaagatgcCGATAACAAACATGATGACAAAGAATATGGAGATCCGTCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTCGACCTCCACCAGAAATTTGTTAAAGCTGTGAATCAGATAGGATTTAataAAGTTGGTCCAAAGAAAATACTCGATCTTATGAATGTTCCATGGCTGACTAGAGAAAATGTTGCTAGCCACTTGCAGAAATATCGGCTCTACTTGAGCAGATTGCAGAAGGAAAATGATCAGAAATCTTCGTCATGCGGGCTGAAGCTTTCGGATTTGCCATCAAAAGATCCTCCGGAAAGTTTTGGTTGTCAGAACTTAATCAGCAGGCAACAAAACGATGATAAAGTTAAACTCGATGGCTTCGAAGGTAGCGTAAAACCTCAGAACGTGGACGCCAAAAGTGATCTGAAGGGTATTTCAGAGTCCTCAAGCGAAAAAAGAAGAGCTTTGACCAACAACATTATCAACATTGCTGATAAAAAGATAAGGAGGAGTTCTTTGGAATCACAAGGTAAGAGCCAGGTATTTGATTGCACCATCCCAACACGATATTCTTGGAGTGAAGTTCCGGAAATGCAActcaaacaagaaaaggaGTCACTTCATTTAGAAGATAGCTTCGGCCCATTGCCACGTCACGTCCAGGTTAATGTTAATCAATTGCAATCAGTTAGTTCGGGGGACATTGCTGCTTGTATTGAAACTAACAAGAGTAGTGATTATGCCAGTTCAATACCCAAGAGCCATACAGACACAGTGAATGGTCATGGTCATGGTCATGGTCATGGTCAGCCAATTCAAACACAGGACGACTTTAGTATGAATGGCTTTCCTGATCAAAGAAACCTAGCTTCTGCACCTTTGGACTTGGACTTGTTTTGGCTACAAGGTGAATGTTATAATACCAACTTGGGGCTGCAGATGTCAGAGTATTACGATGCAGGGCTCATTGCACAAGTTCCAACTCACTTGTATGATTCGGCAGATTATTCAGTCATAGATCAAGGCCTATTTATAGCATG 1568 0.4107 MDSSPRRDAFPAGLRVLVVDDDPTWLRILEKMLKKCSYQVTTCCLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMNGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESLEGIGIHLIRNGLNQSDDGSLFCLEDIMTSPEKRNLKDADNKHDDKEYGDPSSTKKARVVWSVDLHQKFVKAVNQIGFNKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSCGLKLSDLPSKDPPESFGCQNLISRQQNDDKVKLDGFEGSVKPQNVDAKSDLKGISESSSEKRRALTNNIINIADKKIRRSSLESQGKSQVFDCTIPTRYSWSEVPEMQLKQEKESLHLEDSFGPLPRHVQVNVNQLQSVSSGDIAACIETNKSSDYASSIPKSHTDTVNGHGHGHGHGQPIQTQDDFSMNGFPDQRNLASAPLDLDLFWLQGECYNTNLGLQMSEYYDAGLIAQVPTHLYDSADYSVIDQGLFIA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00021 522 PIRSF RR_ARR_type-B 1 483 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bva05g00021 522 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 421 - -
Bva05g00021 522 MobiDBLite consensus disorder prediction 304 326 - -
Bva05g00021 522 CDD REC_typeB_ARR-like 16 130 - -
Bva05g00021 522 MobiDBLite consensus disorder prediction 433 454 - -
Bva05g00021 522 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 421 IPR045279 GO:0009736
Bva05g00021 522 SMART REC_2 14 126 IPR001789 GO:0000160
Bva05g00021 522 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
Bva05g00021 522 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Bva05g00021 522 Gene3D - 194 257 - -
Bva05g00021 522 SUPERFAMILY CheY-like 13 143 IPR011006 -
Bva05g00021 522 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Bva05g00021 522 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Bva05g00021 522 Gene3D - 14 178 - -
Bva05g00021 522 Pfam Response regulator receiver domain 16 125 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00021 Bva-Chr5 104710 108194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00021 8 264 Response Regulator Gene Family AT2G25180 52.874 3.33e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Bva05g00021 Response_reg 1.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00021 - K14491 gmx:100799877 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00021 05 104710 108194 Bva05g00021 05 104710 108194 ECH