Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00014 ATGCCCTCCTTACTTGTCTCTGCTTTTCAGTCTACAGTTATGATGACATTTATGTTGCTCTTGCTGCTTCTTGCTCCGTCCTTCGTTTTCTCTTCTCCAGTTGAAGATCCTCAATCAGTAGTGGAACAAGTACTCAgGAGCATCAATAACGCCTCCTCGAGAGTGACGAGAAATCTGGGCTTTCTTTCTTGTCGAACGGGTAACCCCATTGATGATTGTTGGAGGTGCGACCCCAATTGGGAAAAAAACAGGAAGCGCCTCGCAGACTGTGGGATTGGGTTCGGGAAGAATGCGATTGGAGGGAGAGATGGTAAAATATACCTAGTGACTGACCCTGGTGACCACCCTGTGAGTCCCAAGCCAGGGACTCTAAGGTATGGTGTTATCCAACAAGAGCCACTGTGGATAATTTTCGAGCGCGACATGGTGATAAAGCTAAAACAGGAGCTTATGATGAATTCTTTCAAAACCATTGACGGAAGAGGAGCAAAAGTGCACATTGCCGGTGGACCTTGCATTACCATACAGTATGTGACCAACATTATAATTCACGGCATTCACATCCATGATTGCAAGCAAGGGGGGAATGCCTACGTGAGAGACTCTCCAACCCATTACGGCTGGAGAACTCTTTCCGACGGTGATGCCGTCTCCATCTTTGGTGGGAGTCATGTTTGGGTGGACCATTGCTCCTTGTCAAATTGCCGCGATGGCCTAATCGATGCCATTCATGGATCCACAGCCATAACCATATCCAACAATGACATGACCCACCATAACAAGGTCATGCTTTTAGGCCACAGTGATTCTTATAAACAGGACAAGAATATGCAAGTCACCATTGCCTTCAACCATTTTGGGGAAGGACTTGTGCAGAGAATGCCAAGATGCCGACACGGTTATTTTCATGTGGTGAACAATGACTATACCCATTGGATGATGTACGCCATAGGCGGTAGTGCTGCCCCAACTATCAACAGCCAGGGCAACAGATTTCTAGCTCCCGATGACGCAACTTTCAAAGAGATTACAAAGCACGAGAATGCAGCAGAGAGTGAATGGAAGAAATGGAATTGGAGGTCTTCGGGAGATTTAATGTTGAACGGAGCTTTCTTCAGGGCATCGGGAGCAGGAGCATCTTCCAGTTATGCTAGAGCGTCGAGCTTGGCAGCAAAACCATCCACCCTCGTCAGTTCTATCACAGCGGCTACTGGAGCTCTTAGTTGCAGAAAGGGCTCGCGCTGCTG 1247 0.4771 MPSLLVSAFQSTVMMTFMLLLLLLAPSFVFSSPVEDPQSVVEQVLRSINNASSRVTRNLGFLSCRTGNPIDDCWRCDPNWEKNRKRLADCGIGFGKNAIGGRDGKIYLVTDPGDHPVSPKPGTLRYGVIQQEPLWIIFERDMVIKLKQELMMNSFKTIDGRGAKVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAYVRDSPTHYGWRTLSDGDAVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNDMTHHNKVMLLGHSDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWMMYAIGGSAAPTINSQGNRFLAPDDATFKEITKHENAAESEWKKWNWRSSGDLMLNGAFFRASGAGASSSYARASSLAAKPSTLVSSITAATGALSCRKGSRC 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00014 415 SUPERFAMILY Pectin lyase-like 68 406 IPR011050 -
Bva05g00014 415 PRINTS Pollen allergen Amb family signature 90 107 IPR018082 -
Bva05g00014 415 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Bva05g00014 415 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Bva05g00014 415 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Bva05g00014 415 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Bva05g00014 415 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Bva05g00014 415 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Bva05g00014 415 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Bva05g00014 415 SMART amb_all 141 338 IPR002022 -
Bva05g00014 415 Gene3D - 67 408 IPR012334 -
Bva05g00014 415 Pfam Pectate lyase 147 332 IPR002022 -
Bva05g00014 415 PANTHER PECTATE LYASE 15 412 - -
Bva05g00014 415 PANTHER PECTATE LYASE 18-RELATED 15 412 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00014 Bva-Chr5 64747 66552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00014 3 415 Polysaccharide Lyase AT5G63180 76.202 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00014 K01728 - gmx:100816256 701.434