Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00006 ATGGAGGAAGCAATGGCAGCAAGGTATTGGTGTCATATGTGCTCTCAAATGATAAATCCCATCATGGAAGCGGAGATCAAATGCCCATTTTGCCTAAGTGGATTTGTTGAAGAAATGAGTAGCACTACTCCCACTAGCGACAATGACAATAATGCTGAAGCTGATTTTGGATCGGATAGAGCACTCTCCCTGTGGGCCCCAATCTTGCTCGGCATGATGGGCAATCCACATCGTCAACGAAGAATCAGACGAAGGCATCTTggggatgatgatgatgatgatgccCATGGCAATGATGATAGTGAAGCCCACCATAGTAGAGAAACTGAATATGATCGAGATCTTGAGTCCATTATTCGGATGAGGAGGGGGAGAAGCTCAGCTAACATTCTACAATTGCTGCAAGGCATAAGAGCTGGATTGGCATCTGAATCATATGAGAATTCTGAAGGTGATGACAGTAACggggaaagagaaagagaacgTGTGATCTTGATTAACCCTTTCAATCAGACAATCATTGTTCAAGGTTCCTATGATTCAAACCGGGGTGAGAATGATAATCATAATCCCACTGGGTCTTTTGGTGACTATTTCATAGGACCTGGATTGGATTTATTGTTGCAACATTTGGCAGAGAATGATCCGAACAGATATGGAACACCACCTGCACAGAAGGAGGCAGTTGAAGCACTGCCAACTGTGataatcaatgaaaatttGCAGTGTTCTGTTTGTTTGGATGATTTTCAGCTTGGTTCTGAAGCCAAGGAGATGCCTTGTAAACATAGGTTTCATAGCGGGTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCCTGTCCAGTGTGTAGGTTTCAATTGCCCATGGATGAATCCAAGCGAGACTCCGAAGCATCTAGGAACAATAGCAGCAATAACCAAAGGAATAATGACGATGTTGTTCTTGCGCAACAAGGCAGAGTGAGTAGTGAAGAGGGAGAAGTTGAAGGGAGAAATGCAAGTGGGGTTAGAAGATTCTCATTTCCATGGCTTTTCAATGGATTATTTTCTCCCTCAAacgcttcatcttcatctagTTCTAATGCAAACGGAAATTGTACTCAAACCGATGACAACTG 1118 0.407 MEEAMAARYWCHMCSQMINPIMEAEIKCPFCLSGFVEEMSSTTPTSDNDNNAEADFGSDRALSLWAPILLGMMGNPHRQRRIRRRHLGDDDDDDAHGNDDSEAHHSRETEYDRDLESIIRMRRGRSSANILQLLQGIRAGLASESYENSEGDDSNGERERERVILINPFNQTIIVQGSYDSNRGENDNHNPTGSFGDYFIGPGLDLLLQHLAENDPNRYGTPPAQKEAVEALPTVIINENLQCSVCLDDFQLGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRFQLPMDESKRDSEASRNNSSNNQRNNDDVVLAQQGRVSSEEGEVEGRNASGVRRFSFPWLFNGLFSPSNASSSSSSNANGNCTQTDDN 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00006 372 MobiDBLite consensus disorder prediction 294 313 - -
Bva05g00006 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 341 - -
Bva05g00006 372 SUPERFAMILY RING/U-box 231 291 - -
Bva05g00006 372 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 341 - -
Bva05g00006 372 MobiDBLite consensus disorder prediction 299 313 - -
Bva05g00006 372 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Bva05g00006 372 CDD RING-H2_RNF126_like 242 284 - -
Bva05g00006 372 MobiDBLite consensus disorder prediction 87 111 - -
Bva05g00006 372 SMART ring_2 243 283 IPR001841 -
Bva05g00006 372 Pfam Ring finger domain 242 284 IPR001841 -
Bva05g00006 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 290 IPR013083 -
Bva05g00006 372 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Bva05g00006 372 MobiDBLite consensus disorder prediction 351 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00006 Bva-Chr5 30176 32570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00006 120 290 C3H Transcription Factor Family AT1G26800 37.572 1.48e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00006 K11982 - twl:120016994 480.33