Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03484 ATGGGGTCTATGAACTGGTTGGGTTTCTCCCTCTCCTCTCAAGATCACAGTCAAAGCTCGCCGGAGCAGGTCTCCGGCACTGGAGAGTGCTTTCATCCCACGGCGCCTCATTCGCTCAACCACCTCCCTCCGCCCATTTTCGAAGCATTCAACAGCAATACTCACGATAATCATACTCAAGATTGGAACTACGTAAGGCTAAAGGGGTTGGAGGACAAGTACAAGAGTAATAGTGAGAGCAGTTCGTTGTACGGTAGCCAAAACCTGGACAAGAGCAGCCAACAACAAGAGCCTCAACTTGAGAACTTCCTAGGAAGTGATCATCGGGACAACCACGCTACCTCTGCCTCTGTTGGAGATTATATGTTCTCTTCTTTACAACTTCCACTTGCACCTGCAGATCAGAGCGCCGAAACATCAACCCACGGCGTTGCTGCTGGTGCTGCCACTGGTTCCAATATTGGATTGTCCATGATAAAGACATGGCTCAGGAACCAACCAATTGCAATCTCCCCATCACAAGAGCACAACGTTAATAATGCTGGTTCTGGTGTTGGAGCCACAAATACTCAGTCTTTGTCGCTGTCCATGACCATGAGTAGCCTTCTTGCACCCAATGAGAATTGCTCGTCGGATAATAAGCAGCCCACTACCACCAACGATACTCAGAGTCAGACCCCATCTGTTGATCAGGCTACGCCCAGAAAGTCCGTTGACACCTTTGGTCAGAGGACTTCCATATACCGTGGCGTAacaagGCATAGGTGGACGGGCAGATATGAGGCTCACCTCTGGGATAATAGTTGCAGAAGAGAGGGCCAAACTAGAAAAGGAAGGCAAGGTGGTTatgataaagaagaaaaggcaGCCAGAGCTTATGATTTAGCGGCACTAAAATACTGGGGAACCACCACAACAACTAATTTTCCTattagcAACTATGAAAAAGAGTTGGAAGAAATGAAGCACATGACCAGGCAAGAGTACGTTGCATCGTTGAGAAGGAAGAGTAGTGGGTTTTCCCGTGGCGCATCCATATATCGAGGAGTGACGAGACATCACCAACACGGTAGATGGCAAGCTAGGATTGGAAGAGTTGCTGGCAACAAAGATCTATACTTGGGAACGTTTAGCACACAAGAAGAGGCAGCAGAGGCATACGATATTGCAGCCATAAAGTTCCGAGGGCTGAATGCAGTGACAAACTTCGACATGAGCAGATACGATGTGAAGAGCATACTGGAGAGCAGCACTTTGCCAATTGGTGGAGCGGCTAAGCGTCTCAAAGAACATCAGGTAATGGAGCAGCCTCAAACAGATCATCGCGATAGTTCCCATTGCCACGGAAATGGAATCGCCAACGTCCTGTATGGACATGGATGGCCTGCGTTGCAGTCTCAGTCTCAGCCTCAGCCTCAGCCTTACGCCATGCACGTGCACTACCCCTATGGCAATGGATCACAATCACAAGGGCTCTGGTGCAAGCAAGAACGAGATTCTGATCACTGTAACCACGGCTTTGTAGATCTCCGTCAACTCCATCTAGCTGGGAATACCCAGTACAATTGGTTTCATTCTTCTACGACGACGACGTCTATGGATTCTTCGTCTGCTGCTAATTCCATGGACAATAGCTGTGGATCCAACTCCATTAGTATTTATGGCGGGGATCATGGATACGGAGGCAGTAGCGGCTACGCGATTCCCATGGCAACTAGTACGTCGACTGTCATTGCCAATGATCATGATCGCCAAAACCAAACGTGTAATGGATTTGGTGATGAAAACCAAAGCGTGTTTTACTCTTTGGATGATCCCTAtcatgctgctgctgctgctcgCAACTTGTATAATTATTCTTCGGCAGATGTACGAACATACGTCGACCAGCAGGGCAACACCAACACCAACTGGGTACCGACTGCAATTCCAAGGTCCTCGTCTACCAATATACTAGCTCTCTGCTCGGGAGCTCCACCTTTCCCATTGTTGCatgattg 2000 0.4725 MGSMNWLGFSLSSQDHSQSSPEQVSGTGECFHPTAPHSLNHLPPPIFEAFNSNTHDNHTQDWNYVRLKGLEDKYKSNSESSSLYGSQNLDKSSQQQEPQLENFLGSDHRDNHATSASVGDYMFSSLQLPLAPADQSAETSTHGVAAGAATGSNIGLSMIKTWLRNQPIAISPSQEHNVNNAGSGVGATNTQSLSLSMTMSSLLAPNENCSSDNKQPTTTNDTQSQTPSVDQATPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESSTLPIGGAAKRLKEHQVMEQPQTDHRDSSHCHGNGIANVLYGHGWPALQSQSQPQPQPYAMHVHYPYGNGSQSQGLWCKQERDSDHCNHGFVDLRQLHLAGNTQYNWFHSSTTTTSMDSSSAANSMDNSCGSNSISIYGGDHGYGGSSGYAIPMATSTSTVIANDHDRQNQTCNGFGDENQSVFYSLDDPYHAAAAARNLYNYSSADVRTYVDQQGNTNTNWVPTAIPRSSSTNILALCSGAPPFPLLHD 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03484 666 SUPERFAMILY DNA-binding domain 345 406 IPR016177 GO:0003677
Bva04g03484 666 PANTHER BNAC02G44180D PROTEIN 5 580 - -
Bva04g03484 666 ProSiteProfiles AP2/ERF domain profile. 247 310 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 MobiDBLite consensus disorder prediction 1 37 - -
Bva04g03484 666 Pfam AP2 domain 346 396 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 Pfam AP2 domain 247 302 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 CDD AP2 345 406 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 MobiDBLite consensus disorder prediction 203 244 - -
Bva04g03484 666 ProSiteProfiles AP2/ERF domain profile. 346 404 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 580 - -
Bva04g03484 666 CDD AP2 246 312 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 PRINTS Ethylene responsive element binding protein signature 386 406 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 SMART rav1_2 346 410 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 SMART rav1_2 247 316 IPR001471 GO:0003700|GO:0006355
Bva04g03484 666 MobiDBLite consensus disorder prediction 76 98 - -
Bva04g03484 666 Gene3D AP2/ERF domain 346 406 IPR036955 GO:0003700|GO:0006355
Bva04g03484 666 Gene3D AP2/ERF domain 247 312 IPR036955 GO:0003700|GO:0006355
Bva04g03484 666 SUPERFAMILY DNA-binding domain 246 312 IPR016177 GO:0003677
Bva04g03484 666 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03484 Bva-Chr4 27545962 27549661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03484 98 574 AP2-EREBP Transcription Factor Family AT5G17430 52.381 2.05e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Bva04g03484 AP2 3.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03484 K09285 - qsu:111984882 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03484 04 27545962 27549661 Bva04g03484 04 27545962 27549661 ECH