Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03469 ATGGGTTTAATAGTGGAAGAGGGACTAGATGACGACATTCTTGTTCCGCCGCCTAATTTCTCTCTGGTTGAGGACGGCATTTTTCGATCGAGCTTCCCTCAACCCTCAAATTTCGGCTTCCTTCAAACCCTAAATCTTCGATCCATCATTTACTTGTGTCCTGAGCCCTATCCACAAGAAAATTTGGAGTTTCTTCGATCGAAAAATATTCGGCTCTTTCAATTTGGAATTGAAGGGAAGACGGAGCTTCCTGCATCTATTCCCAAGGATACCGTGATGGAGGCCCTGAAAGTTTTAATCGATGTGAGAAATCACCCAGTATTGATACATTGCAAACGAGGAAAGCATCGAACAGGTTGCCTTGTTGGTTGCTTGAGAAAGTTGCAGAATTGGTGTTTGTCTTCTGTTTTTGAGGAGTACCAGCGATTTGCTGGTGCTAAATCCAGGGCAAcggatttaagatttatagaAATGTTTGACGTGTTATGCCTGAGGCAGTGCCTTTACAGCATCATATACCAGTACCAAGGATATGGTTCGAAGAGGCGGTTGTTGTATAGGGAAGAGAATCTGCAGAAGCCCCAAGTGACATCAGTTTA 599 0.4274 MGLIVEEGLDDDILVPPPNFSLVEDGIFRSSFPQPSNFGFLQTLNLRSIIYLCPEPYPQENLEFLRSKNIRLFQFGIEGKTELPASIPKDTVMEALKVLIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYQRFAGAKSRATDLRFIEMFDVLCLRQCLYSIIYQYQGYGSKRRLLYREENLQKPQVTSV 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03469 199 Gene3D Protein tyrosine phosphatase superfamily 13 162 IPR029021 -
Bva04g03469 199 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 182 - -
Bva04g03469 199 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 10 182 - -
Bva04g03469 199 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Bva04g03469 199 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Bva04g03469 199 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Bva04g03469 199 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Bva04g03469 199 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Bva04g03469 199 Pfam Tyrosine phosphatase family 14 161 IPR004861 -
Bva04g03469 199 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 170 IPR020422 GO:0006470|GO:0008138
Bva04g03469 199 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 161 IPR029021 -
Bva04g03469 199 CDD PFA-DSP_Siw14 14 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03469 Bva-Chr4 27477860 27480599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03469 1 199 Protein tyrosine phosphatase (PTP) family AT3G02800 69.458 3.70e-103 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03469 K18045 - qsu:112008997 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03469 04 27477860 27480599 Bva04g03469 04 27477860 27480599 ECH