Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03464 ATGCAATTCGATGCCGCAATTCCGATGGCCCCAGCGGCCATCACCGACCCATCCTACCTGTCACCGTCCCTCGCCACCACCCAAGATGCAATGTGGCAAATGAAATTCAGAGCAGGTGAAACAATGGATTCCGGACCTTATCCTGAGCGTCCAGGAGAACCAGATtgctcatattacatcagaaCAGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCACCTAATAGGAAACTGGCTATTGCTGCTGCAAGGATGAAAGGTGAGTTTCCAGAAAGAATAGGACAACCAGAATGTCAGTACTATCTCAAGACAGGAACTTGTAAATTTGGGGCCACATGCAAGTTTCATCATCCTAGAGACAGGGCTCTGATTGCTGGAAGAGTTgccttaaatattttaggcTATCCACTTCGCCCTGACGAGCCTGAATGCCTTTATTATTTGAGAACTGGACAATGCAAATTTGGGAGCACATGCAAATTCCACCATCCTCAACCAACTAATATGATGGTTTCATTGCGTGGCTCTCCTGTTTATCCTAGTGTCCATTCTCCAACCACACCAGGTCAGCAGTCATATGCAGGTGGAATTACAAATTGGTCCCGTGCATCTTATATTCCTAGTCCACGTTGGCAAGGTCCTTCAAGTTATGCCTCTCTAATTCTACCTCAGGGAGTGGTTTCAGTGCCTGGATGGGGTGCATACAGTggTCAGATGGGATCAATCTCTACTCCAGATAGTCCACAGCAAACAATGGGAAACGATCAAATTTATGGGACTTCTCGCCAAGGTGAAGCAACAAATAGTGGATCTCAAGGGACATATTCTCAATTCCGTTCCAGCTCTGTTCCTTTAGGGTTTTATGCATTGCAAAGGGACAACATATTTCCTGAAAGACTTGGTCAGCCTGAATGTCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCATCATCCGCGTGAGAGGATGATTCCTGCTCCTGACTGTGCATTGAGTCCCTTAGGCCTGCCTCTGCGTCCAGGAGAGCCTTCATGTGTCTTCTATTCACGTTATGGAATCTGTAAATTTGGACCAAGTTGCAAGTTTGACCATCCAATGGGAATATTCACCTATAATCTATCTGCGTCACCTTCAGCTGATGCCTCAGTCCGGCGTTTGTTGGGGTCATCGTCTGGAGCTGCAgcattaaatttatcatctgAAGGACTTGTTGAATCAGGCTCCACAAATCCCAGACGAGTTTCACTTTCAGAGACAAGACAGATTCCTTCTGGTGATGACGACATTGATGACGAGGGATG 1328 0.4458 MQFDAAIPMAPAAITDPSYLSPSLATTQDAMWQMKFRAGETMDSGPYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDRALIAGRVALNILGYPLRPDEPECLYYLRTGQCKFGSTCKFHHPQPTNMMVSLRGSPVYPSVHSPTTPGQQSYAGGITNWSRASYIPSPRWQGPSSYASLILPQGVVSVPGWGAYSGQMGSISTPDSPQQTMGNDQIYGTSRQGEATNSGSQGTYSQFRSSSVPLGFYALQRDNIFPERLGQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCALSPLGLPLRPGEPSCVFYSRYGICKFGPSCKFDHPMGIFTYNLSASPSADASVRRLLGSSSGAAALNLSSEGLVESGSTNPRRVSLSETRQIPSGDDDIDDEG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03464 442 Gene3D - 129 177 - -
Bva04g03464 442 PANTHER PROTEIN PHOSPHATASE RELATED 16 441 - -
Bva04g03464 442 SUPERFAMILY CCCH zinc finger 99 123 IPR036855 GO:0046872
Bva04g03464 442 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Bva04g03464 442 SUPERFAMILY CCCH zinc finger 352 375 IPR036855 GO:0046872
Bva04g03464 442 SUPERFAMILY CCCH zinc finger 55 78 IPR036855 GO:0046872
Bva04g03464 442 MobiDBLite consensus disorder prediction 412 442 - -
Bva04g03464 442 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Bva04g03464 442 SUPERFAMILY CCCH zinc finger 144 169 IPR036855 GO:0046872
Bva04g03464 442 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Bva04g03464 442 Gene3D - 301 382 - -
Bva04g03464 442 Gene3D - 48 128 - -
Bva04g03464 442 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Bva04g03464 442 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Bva04g03464 442 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Bva04g03464 442 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Bva04g03464 442 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Bva04g03464 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 168 IPR000571 GO:0046872
Bva04g03464 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872
Bva04g03464 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872
Bva04g03464 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Bva04g03464 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 77 IPR000571 GO:0046872
Bva04g03464 442 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 16 441 - -
Bva04g03464 442 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
Bva04g03464 442 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Bva04g03464 442 MobiDBLite consensus disorder prediction 412 431 - -
Bva04g03464 442 MobiDBLite consensus disorder prediction 243 278 - -
Bva04g03464 442 SUPERFAMILY CCCH zinc finger 305 331 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03464 Bva-Chr4 27458125 27463065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03464 31 441 C2H2 Transcription Factor Family AT3G02830 62.143 6.42e-176 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva04g03464 zf-CCCH 9.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03464 - - gmx:100786261 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03464 04 27458125 27463065 Bva04g03464 04 27458125 27463065 ECH