Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03460 ATGGTTTCGTTATCAAATActcttttgtttcctttgaCAATACAAAACGGCGGGTCTCGGTCTACTAGACTAGCACCTGCCTACGGAGAAgtggtaaatttattttccaatgAACGGAGGAAGGAGCATAGGAAGATTGTGTGTGCTTGCCTGGCTCCTCCGCGGAACCTGAAGAACGATGAGTCCTCGGCTATTAAATTCAATGGTTCATCTGAATCAGAACATTTAAGCGTAGTACGGGATCGCGAAGATGATTCTGATGTTCTTATCGAGTGTAGAGATGTCTATAAATCTTTcggggaaaagaaaatcttaaatGGCGTGAGCTTCAAGatCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCTTCTGGGACTGGTAAATCCACAGTTTTGAAGATTATCGCTGGACTTCTTGCTCCGGACAAGGGAGAGGTTTATATTAGAGGTAGAAAGAGAGCTGGTCTAATAAGTGATGAGGAGATATCTGGACTTAGGATTGGCTTGGTGTTCCAAAGTGCTGCACTTTTTGATTCTCTGACTGTCCGGGAAAATGTTGGTTTTCTCTTGTATGAAAACTCGAGCATGTCTGAGGATCAAATTTCAGAGCTTGTGAAGGAATGCTTGGCTGCAGTTGGATTAAAGgGAGTTGAGGATCGGCTACCCTCTGAGTTGTCAGGTGGGATGAAGAAACGAGTTGCTTTAGCTCGATCCATTATATATGACATCACAAAAGATTCTTTAGAGCCCGAGGTGCTGTTGTATGATGAACCAACTGCTGGGCTTGATCCTATCGCTTCTACTGTAGTTGAGGATCTGATTCGCTCTGTCCACATTAAAGGTCGAGATGCAGTTGGGAAGCCTGGGAAGATTGCATCTTATGTGGTTGTCACACACCAACATAGTACCATTAAAAGGGCCATTGACAGGTTGCTGTTTCTACACAAGGGCAAGATTGTTTGGGAAGGAATGACTCATGAATTTACTACATCAGCAAATCCAATTGTTCAACAGTTTGCATCCGGGAGCCTGGACGGGCCCATCAAATATTA 1052 0.4173 MVSLSNTLLFPLTIQNGGSRSTRLAPAYGEVVNLFSNERRKEHRKIVCACLAPPRNLKNDESSAIKFNGSSESEHLSVVRDREDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGRKRAGLISDEEISGLRIGLVFQSAALFDSLTVRENVGFLLYENSSMSEDQISELVKECLAAVGLKGVEDRLPSELSGGMKKRVALARSIIYDITKDSLEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDAVGKPGKIASYVVVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHEFTTSANPIVQQFASGSLDGPIKY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03460 350 ProSitePatterns ABC transporters family signature. 225 239 IPR017871 GO:0005524
Bva04g03460 350 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 90 341 IPR003439 GO:0005524
Bva04g03460 350 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 1 350 - -
Bva04g03460 350 Gene3D - 77 342 IPR027417 -
Bva04g03460 350 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 1 350 - -
Bva04g03460 350 SMART AAA_5 114 318 IPR003593 -
Bva04g03460 350 Pfam ABC transporter 105 260 IPR003439 GO:0005524
Bva04g03460 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 330 IPR027417 -
Bva04g03460 350 CDD ABC_Org_Solvent_Resistant 90 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03460 Bva-Chr4 27440443 27444600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03460 89 319 Calmodulin-binding Proteins AT2G36910 28.807 6.79e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03460 - - qsu:112020978 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03460 04 27440443 27444600 Bva04g03460 04 27440443 27444600 ECH