Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03441 ATGAACAGGTTTTCTAAAGCCCAAAAGGAGGCAATGGCCATGGCCTTGGAGTCGAAGGACAAATTGCGGGGACTCCTAAATATTATCGTAGAGGACGATGATTTTCCGGTAGAAGTCGCCAACGAAGCTATTAGAACACTATCTGCTataaaagatttgaaattaaagAGGTCGCTCTCTCAGAATTTGGATGAGTTGGTTCCTCCCGAATTTCGCTGCCCTATTTCAAGAGAGCTAATGAGGGATCCTGTTGTGTTGGCTACTGGACAGACTTATGATCGACCGTTAATCCAGAGGTGGTTGAATGAAGGGCACAGGACATGCCCTCAAACCCAGCAAGTCCTCTCTCACACCATCCTTACTCCTAATTACCTAGTTCAAGACATGATTTCACAGTGGTGCAAGGAGCATGTCATTGAGCTGCCAAAATCTGCTCAGGACGTAATTGATGAACAAGTGATAACTGATGCAGATAGAGGCCGTTTGAATTCATTGCTTTGTAAGTTGTCATTGTCTGTTCCCCATCAGAAAGAAGCTGCGAAAGAGCTTCGACGGCTAACAAAACGAATGCCTTCATTTCGAATCCTTTTTGGGGAGTCCAGTGATGCTATTCCACAGTTGCTGAGTCCATTATCAACTGGCACGACAAATATACATCCTGATCTCCACGAGGACTTGATCACAACTGTTCTAAATCTGTCAATTCATGAtgacaataagaaaaaatttgcaGAGGATTCAATGACCATCCCGCTGCTAATTGATTCCTTGAAATCTGGTACCATTCAGACAAGAAGTAATGCTGCTGCAGCTATTTTCACGTTATCAGCTTTTGATACCAACAAACAACTCATTGGAAAATCTAAAGCTATTAAACATTTGATTGACCTCTTAGAGGAGGGACATCCCTTGGCCATGAAAGATGCAGCCTCAGCCGTATTCAGCCTATGTCTTGTGCATGAAAATAAAGGGAGGACTGTCCGCGAAGGAGCAGTCCAGGTTATTCTAAACAAGATCATGGACCACATTCTAGTTGATGAATTGTTGGCTATACTGGCTCTCCTCTCTAGCCATCCAAAGGCTGTTGAAGAAATGGGTGATCTTGGTGCTGTCCCCTTCTTGCTAAGTGTTATAAGGGAGAGCACATCCGAGCAAAGCAAGGAAAATTGTGTGGCATTGTTACATACAATCTGTTTCAAcgataaaacaaaatggaaggaaattagagaagatgaaaaggCAAACAGCACACTTTGTAAACTTGCTCAAAGTGGAACTTCGAGGGCCAAAAGAAAAGCTAATAATATTCTTGATAGACTCAATAAATCTCCCTCTTTAGGGAAATG 1346 0.4079 MAMALESKDKLRGLLNIIVEDDDFPVEVANEAIRTLSAIKDLKLKRSLSQNLDELVPPEFRCPISRELMRDPVVLATGQTYDRPLIQRWLNEGHRTCPQTQQVLSHTILTPNYLVQDMISQWCKEHVIELPKSAQDVIDEQVITDADRGRLNSLLCKLSLSVPHQKEAAKELRRLTKRMPSFRILFGESSDAIPQLLSPLSTGTTNIHPDLHEDLITTVLNLSIHDDNKKKFAEDSMTIPLLIDSLKSGTIQTRSNAAAAIFTLSAFDTNKQLIGKSKAIKHLIDLLEEGHPLAMKDAASAVFSLCLVHENKGRTVREGAVQVILNKIMDHILVDELLAILALLSSHPKAVEEMGDLGAVPFLLSVIRESTSEQSKENCVALLHTICFNDKTKWKEIREDEKANSTLCKLAQSGTSRAKRKANNILDRLNKSPSLGK 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03441 437 Gene3D - 161 432 IPR011989 -
Bva04g03441 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 129 IPR013083 -
Bva04g03441 437 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Bva04g03441 437 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Bva04g03441 437 SUPERFAMILY ARM repeat 159 429 IPR016024 -
Bva04g03441 437 Pfam U-box domain 56 127 IPR003613 GO:0004842|GO:0016567
Bva04g03441 437 SMART arm_5 347 388 IPR000225 GO:0005515
Bva04g03441 437 SMART arm_5 267 307 IPR000225 GO:0005515
Bva04g03441 437 SMART arm_5 225 266 IPR000225 GO:0005515
Bva04g03441 437 PANTHER U BOX DOMAIN-CONTAINING 4 433 - -
Bva04g03441 437 CDD RING-Ubox_PUB 60 102 IPR045210 -
Bva04g03441 437 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 4 433 - -
Bva04g03441 437 SUPERFAMILY RING/U-box 55 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03441 Bva-Chr4 27356445 27357530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03441 118 435 U-box Gene Family AT3G07360 57.099 1.88e-121 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03441 - - gmx:100806619 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03441 04 27356445 27357530 Bva04g03441 04 27356445 27357530 ECH