Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03428 ATGGAACCCAATGAAAACCAACTCAGCTCCTACTACCACCACCAACAGCAGCAGAGCACCACCTCTTCCGTCACCCCCACAACCGCCGTCGCCACCAACACACCTTCACGGACGAATGGCCTCCTACCACACACTGAAGGGTCCCACATGGTCTACCCTCATTCCGTGCCCTCTGCGGTGTCTTCCCAACTTGAACCGGCCAAGAGGAAGAGAGGCAGGCCCAGAAAGTACGTTACGCCTGAGCAAGCTCTAGCGGCTAAGAAAGCTGCTTTGTCTTCCTCTCACACCTTCTCTTCCAAGGACAAGGAGTCCACTGCCTCTGCTTCATCTTCTTATACCGGCTTTTCCAAGAGATCGTTTGCTCTAGGCAATGCAGGACAAGGCTTCACTCCACATGTCATTACAGTTGCTGCTGGTGAGGATGTCGCCCAGAAAATTATGTTGTTCACGCAACAAAGTATGCGGGAAATATGCATTTTATCTGCATCTGGTTCAATCTCCAATGCCTCTCTTCGGCAGCCAGCAACCTCAGGAGGCAATGTTGCATACGAGTTGTCACTTGATATATGTCAGGGTCGGTTTGAGATCATTTCATTATCTGGTTCCTATGTCCGTACTGAACTTGGAGAGCGAACTGGTGGTCTGAGTGTGTGCTTATCTAGTACTGATGGCCAAATCATAGGCGGAGGAGTTGGTGGGCCCTTAAAAGCTGCGGGTCCAGTTCAGGTCATTGTCGGTACGTTTTTTATTGACCACAAGAAGGTTGCTGGCGGTGGTGTAAAAGGGGATGCTTCTGTAAGGAAGTTGCCATCACCGGTTGGCGAATCAGCATCGGGTTTAAGTTTCCGCCCAGCAATGGACTCTTGCAGTGGTAATCCTATTCGGGGAAATGATGATCATCAGCATCAAACGATTGGAGGAAGTCATTTCATGATTCAACAGCAGGGTATGCATATGGCACCTTCCAGGCCTACAGATTGGGTGGGGCGTCTTGATTCAAGAAGTGCTGGGTATGAACTGACAGGAAGAACAGGTCATGGAGCACAGCAGTCCCCTGAAAATGGGGATTATGATCAGATTCCTGACTG 1088 0.5009 MEPNENQLSSYYHHQQQQSTTSSVTPTTAVATNTPSRTNGLLPHTEGSHMVYPHSVPSAVSSQLEPAKRKRGRPRKYVTPEQALAAKKAALSSSHTFSSKDKESTASASSSYTGFSKRSFALGNAGQGFTPHVITVAAGEDVAQKIMLFTQQSMREICILSASGSISNASLRQPATSGGNVAYEGRFEIISLSGSYVRTELGERTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDHKKVAGGGVKGDASVRKLPSPVGESASGLSFRPAMDSCSGNPIRGNDDHQHQTIGGSHFMIQQQGMHMAPSRPTDWVGRLDSRSAGYELTGRTGHGAQQSPENGDYDQIPD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03428 355 CDD DUF296 130 241 IPR005175 -
Bva04g03428 355 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 241 IPR005175 -
Bva04g03428 355 MobiDBLite consensus disorder prediction 1 110 - -
Bva04g03428 355 Gene3D - 131 260 - -
Bva04g03428 355 MobiDBLite consensus disorder prediction 323 355 - -
Bva04g03428 355 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 241 - -
Bva04g03428 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 347 IPR039605 GO:0003680
Bva04g03428 355 ProSiteProfiles PPC domain profile profile. 125 263 IPR005175 -
Bva04g03428 355 MobiDBLite consensus disorder prediction 1 43 - -
Bva04g03428 355 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 1 347 - -
Bva04g03428 355 MobiDBLite consensus disorder prediction 89 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03428 Bva-Chr4 27241442 27246454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03428 22 355 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 52.589 1.57e-100 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03428 - - gmx:100816781 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g03428 04 27241442 27246454 Bva04g03428 04 27241442 27246454 ECH