Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03427 ATGGAAAAAGCGTTGGCTTCTCtctttttgctttcttgtCTCGTCATCTCTGTTTCTGCCGCCGATGTTGAATATGCACATTGTAGTTGTGATGATGAGGGGTTCTGGAGCATACAAAGCATTCTAGAATGTCAAAAAGTcagtgatttttttattgctgTAGCATATTTCTCGATCCCCATTGAATTACTTTACTTCGTTAGCTGCTCCAACGTACCATTCAAATGGGTTCTCCTTCAATTCATAGCATTCATAGTTCTCTGTGGCTTGACGCACTTACTGAATGGATGGACTTATTACGGACCTCACTCATTCCAGTTGATTCTCTCCCTTACTATCGCTAAATTCCTTACAGCTCTTGTCTCATGTGCAACTGCAATAACCCTTTTGACTCTGATTCCTCTTGTTCTCAAGATCAAAGTGAGGGAGCTTTTCTTGAGGAAGAATGTTCTGGAATTAGACCAAGAAattggatttatgaaaaaacaaaaggaagcaAGCTGGCACGTTCGGATGTTAACCCGAGAAATCAGGAAGTCTTTGGATAAGCATACTATCTTGTATACCACACTCGTTGAGCTTTCTAAGACACTGGACTTGCTTAATTGTGCAGTTTGGATGCCAAATGAGGACAGACGAGAAATGCACTTGACTCATGAATTGAAAACGAGGTCATCCAACAATTTTCATAATTCTATTCCTATAAACGACCCAGATGtattagaaataagaaaatgcaaaGGTGTGAGAATTTTGGGACCTGAATCTACTCTAGGAGCTGCAAGTGGTGGTGGATCTGGGGAGTCTGGTTCTGTAGCAGGTATTCGCATGCCAATACTTCATGTTGCAAATTTCAAAGGAGGAACTCCAGAGCTGGTTGAGACGTCTTATGCTATACTGGTTTTGGTTCTTCCACATGCAAACTCTGCAGTTTGGAGCAGCCATGAAATGGAGATAGTGGAAGTTGTTGCTGATCAGGTGGCTGTAGCATTGTCTCATGCTTCAGTTCTTGAAGAGTCCCAACTAATGAGACAGAAACTGGCAGAGCAGAACCGAGCATTACAACAAGCCAAAATGAATGCAATGATGGCAAGCCAGGCTAGGAACTCATTTCAGAAAGTGATGAGTCATGGAATGCGGAGGCCTATGCATTCAATATTGGGATTGCTTTCAATATTTCAAGAGGATGATGCCATATCTAAACACAAGATTATTATTGACACGATGGTGAAAACTAGCAATGTTCTCTCAAGTTTGATTAATGATGTAATGGAGATTTCAACAAATGACAAAGGAAGCTTCCGGTTAGAGATGAAACCTTTCCTTCTACATTCCATGATGAGGGAAGCTGCTTGCATTGCCAAGTGTTTGTGCGTATATAAAGGCTTTGGTTTTGAAATTGATGTTCAGAAGTCGTTGCCTGATCAGGTGATTGGTGACGAAGCGAGGGCCTTTCAAGTAATTTTGCATATGATTGggtatttattgaatttacaCAATCGAGGAAGGACTCTCATTTTCCGGGTTTTTCTTGAAAATGCAAGTGGGAATAAGGATGATAAAAATTTGGGAATATGGAGATCAAGCATGCAAAATGAGTATGCATATATAACATTTGATTTTCGGATAACTGGTACAACTTCTCAGTCTGATGAATCAATGTCGACAAGCCAGCTTGTTGATAGGACACACTACAAAAATGAACCTAAGGAGGACCTGAGCTTCAGCATGTGCAAAACACTAGTGCAGATGATGCAAGGTAATATCTGGATATCACAGAACTCAATGGGTTTGGCCCAAAGCATGACGCTTGTTCTCAAGTTTCAGATAGGGTCATCATTTGGAAGGTCCATTTTGGCTCCTAAATATTCTTCCAACTCGCAGTTTAGAGGCCTCAGAGTAATAATGGCCGATGACGATAATGTAAACAGGACAGTAACGAAGAAGCTACTTGAGAAGTTGGGTTGTCAAGTAACTGCTGTTTCATCTGGGTTTGAGTGCCTGAGTGCTATCAGTGCATCTGGTAACTCGTTCAAAATTATCCTTTTGGATCTTCACATGCCTGAAATGGATGGTTTCCAAGTAGCTATGAGGATCCGCAAGTTCCACAGCCGGAATTGGCCCGTCATCATCGCTCTTACAGCAAGTGCAGAAGATCATATAATGGAGAGATGTATGCAGGTGGGAATGAATGGAGTCATTCGAAAACCCATTCTCCTCAATGATATAGCAGATGAACTCACAAGAGTTCTCCAACGTGCTGCTGAAAATTTGTG 2276 0.3994 MEKALASLFLLSCLVISVSAADVEYAHCSCDDEGFWSIQSILECQKVSDFFIAVAYFSIPIELLYFVSCSNVPFKWVLLQFIAFIVLCGLTHLLNGWTYYGPHSFQLILSLTIAKFLTALVSCATAITLLTLIPLVLKIKVRELFLRKNVLELDQEIGFMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKTLDLLNCAVWMPNEDRREMHLTHELKTRSSNNFHNSIPINDPDVLEIRKCKGVRILGPESTLGAASGGGSGESGSVAGIRMPILHVANFKGGTPELVETSYAILVLVLPHANSAVWSSHEMEIVEVVADQVAVALSHASVLEESQLMRQKLAEQNRALQQAKMNAMMASQARNSFQKVMSHGMRRPMHSILGLLSIFQEDDAISKHKIIIDTMVKTSNVLSSLINDVMEISTNDKGSFRLEMKPFLLHSMMREAACIAKCLCVYKGFGFEIDVQKSLPDQVIGDEARAFQVILHMIGYLLNLHNRGRTLIFRVFLENASGNKDDKNLGIWRSSMQNEYAYITFDFRITGTTSQSDESMSTSQLVDRTHYKNEPKEDLSFSMCKTLVQMMQGNIWISQNSMGLAQSMTLVLKFQIGSSFGRSILAPKYSSNSQFRGLRVIMADDDNVNRTVTKKLLEKLGCQVTAVSSGFECLSAISASGNSFKIILLDLHMPEMDGFQVAMRIRKFHSRNWPVIIALTASAEDHIMERCMQVGMNGVIRKPILLNDIADELTRVLQRAAENL 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03427 758 SMART REC_2 632 747 IPR001789 GO:0000160
Bva04g03427 758 CDD HATPase_ETR2_ERS2-EIN4-like 473 606 - -
Bva04g03427 758 Pfam His Kinase A (phospho-acceptor) domain 368 432 IPR003661 GO:0000155|GO:0007165
Bva04g03427 758 SUPERFAMILY GAF domain-like 185 334 - -
Bva04g03427 758 SMART HisKA_10 367 432 IPR003661 GO:0000155|GO:0007165
Bva04g03427 758 CDD REC_ETR-like 632 747 - -
Bva04g03427 758 ProSiteProfiles Response regulatory domain profile. 633 751 IPR001789 GO:0000160
Bva04g03427 758 PANTHER ETHYLENE RECEPTOR 10 754 - -
Bva04g03427 758 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 352 432 IPR036097 GO:0000155|GO:0007165
Bva04g03427 758 Pfam Response regulator receiver domain 634 745 IPR001789 GO:0000160
Bva04g03427 758 Gene3D - 170 342 IPR029016 -
Bva04g03427 758 CDD HisKA 365 427 IPR003661 GO:0000155|GO:0007165
Bva04g03427 758 Gene3D - 619 756 - -
Bva04g03427 758 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Bva04g03427 758 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 10 754 - -
Bva04g03427 758 Gene3D - 433 611 IPR036890 -
Bva04g03427 758 SUPERFAMILY CheY-like 628 753 IPR011006 -
Bva04g03427 758 SMART gaf_1 182 341 IPR003018 GO:0005515
Bva04g03427 758 Coils Coil 337 360 - -
Bva04g03427 758 Gene3D - 353 432 - -
Bva04g03427 758 Pfam GAF domain 184 331 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03427 Bva-Chr4 27236420 27240567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03427 20 756 Miscellaneous Gene Families AT3G04580 63.418 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva04g03427 GAF 1.2e-09 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03427 K14509 - gmx:100805023 1149.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03496 13 23773884 23777781 Bva04g03427 04 27236420 27240567 ECH
Bva04g03427 04 27236420 27240567 Bva04g03427 04 27236420 27240567 ECH