Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03425 ATGAATTCCTCTGGCTTCTTCACTCCATACCCAAATTTCGACTCCGAATCCCTTCCATTTAATGAGAATGATTCCCAGGAAATGCTTCTTTATCAAGTGCTGGCCCAAGCTGGCGCCACAGATTCCttggaaataacaaaaacaacaatgGCATCATCATCGTCTCATTCGAGAGACAACCCTGGGGAAACAGATCAAGTTTCTTACAGAGGAGTCCGGAGACGGCCCTGGGGGAAATACGCGGCGGAGATAAGGGACTCTACCAGAAGTGGTGTCAGAGTTTGGTTGGGAACATTCGACACTGCTGAGGCTGCTGCTTTGGCTTATGACCAAGCCGCATTGGCAATGAGAGGTTCAGCTGCTGTTCTCAATTTCCCGCATCACATCGTTCTTCAATCCCTTCAAAACATGGGCTATGCTCTCCATCTCCAAAATGGCTCCTCTCCTGTTCTCGAGTTAAAAAAGAGGCATTCCATCAACAGAAAATCAGAGatcaagaagatgaaaaagaacaaGCAAGAGCTCGGCTTAAATAATACGGTCGTGTTCCAGGATTTAGGGGCTGACCATTTGGAACAGCTTCTTGCTCTGTCCGAGGATGCCACTACCACTTA 614 0.4495 MNSSGFFTPYPNFDSESLPFNENDSQEMLLYQVLAQAGATDSLEITKTTMASSSSHSRDNPGETDQVSYRGVRRRPWGKYAAEIRDSTRSGVRVWLGTFDTAEAAALAYDQAALAMRGSAAVLNFPHHIVLQSLQNMGYALHLQNGSSPVLELKKRHSINRKSEIKKMKKNKQELGLNNTVVFQDLGADHLEQLLALSEDATTT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03425 204 MobiDBLite consensus disorder prediction 48 64 - -
Bva04g03425 204 Pfam AP2 domain 69 118 IPR001471 GO:0003700|GO:0006355
Bva04g03425 204 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Bva04g03425 204 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Bva04g03425 204 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Bva04g03425 204 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Bva04g03425 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 12 198 - -
Bva04g03425 204 PANTHER DNA-BINDING DOMAIN 12 198 IPR044808 GO:0003700|GO:0009873
Bva04g03425 204 MobiDBLite consensus disorder prediction 48 68 - -
Bva04g03425 204 CDD AP2 69 128 IPR001471 GO:0003700|GO:0006355
Bva04g03425 204 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Bva04g03425 204 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03425 Bva-Chr4 27224034 27225499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03425 18 203 AP2-EREBP Transcription Factor Family AT3G23240 50.265 3.96e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g03425 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03425 K14516 - qsu:112003251 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02790 04 24069141 24069944 Bva04g03425 04 27224034 27225499 ECH
Bva13g02707 13 19930026 19930754 Bva04g03425 04 27224034 27225499 ECH
Bva04g03425 04 27224034 27225499 Bva04g03425 04 27224034 27225499 ECH