Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03422 atgtgTGAAGCCCTGCCGAACGAGTACCAACTGTGCGAGGAGATCGGCCGTGGGCGTTTCGGCACCATCTTCCGCTGCTTTCACCCAGTTTCCAACGAATTCTATGCCTGCAAAGTCATTGACAAGCGCCTTCTAACCGATTCTACCGACCGTGAGTGCCTCGAGAATGAATCCAAATACATGACCTTGTTATCTCCGCACCCCAATATTGTTCAAATCTTTGATGTTTTCGAGAACGAAGATTTCTTATCCATGGTGATCGAGCTGTGCGAACCCATTACTCTTTTCGACCGCATCGTCAATCGGCCCTTGCCAGAGACAGAAGCCGCATCAGTCATGAAACAACTTCTTGAAGCTGTCGTGCACTGCCATAGACTCGGCGTTGCTCACAGAGACATAAAACCAGACAATGTTTTGTTTGATTCGAGGAACAGTCTGAAGCTTGCTGATTTTGGGTCGGCAGAGTGGTTCGGTGATGGACGGAGTATGAGTGGGGTGGTGGGTACGCCCTATTATGTGGCGCCTGAGGTTTTGATGGGTAGGGACTACAATGAAAAAGTAGATGTGTGGAGCTGCGGAGTGATTTTGTACATAATGTTGACTGGGATTCCACCCTTTTACGGAGACTCTGCCACTGAGATTTTCGAGTCAGTCTTGAGGGCCAATTTGAGGTTCCCTTCAAGGATTTTCAGATCAGTTTCACCCGCCGCTAAGGATCTTTTGAGGAAGATGATTTGTAGGGATCCTTCGAGGAGATTATCCGCTGACCAAGCCTTGaGGCACTCATGGATCCTGAGTGGAGGAGAGTTAACTGATCAAACTTG 824 0.483 MCEALPNEYQLCEEIGRGRFGTIFRCFHPVSNEFYACKVIDKRLLTDSTDRECLENESKYMTLLSPHPNIVQIFDVFENEDFLSMVIELCEPITLFDRIVNRPLPETEAASVMKQLLEAVVHCHRLGVAHRDIKPDNVLFDSRNSLKLADFGSAEWFGDGRSMSGVVGTPYYVAPEVLMGRDYNEKVDVWSCGVILYIMLTGIPPFYGDSATEIFESVLRANLRFPSRIFRSVSPAAKDLLRKMICRDPSRRLSADQALRHSWILSGGELTDQT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03422 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Bva04g03422 274 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 272 - -
Bva04g03422 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g03422 274 CDD STKc_CAMK 9 263 - -
Bva04g03422 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Bva04g03422 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 272 - -
Bva04g03422 274 Gene3D Transferase(Phosphotransferase) domain 1 94 273 - -
Bva04g03422 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g03422 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Bva04g03422 274 SUPERFAMILY Protein kinase-like (PK-like) 6 266 IPR011009 -
Bva04g03422 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03422 Bva-Chr4 27208818 27210229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03422 9 273 EF-hand Containing Proteins AT1G50700 41.636 3.55e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bva04g03422 Pkinase 1.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03422 - K08794 gmx:548089 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03488 13 23741665 23742900 Bva04g03422 04 27208818 27210229 ECH
Bva04g03422 04 27208818 27210229 Bva04g03422 04 27208818 27210229 ECH