Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03419 ATGAAAAAAAGCAACAACGGAGGCCAAATAAAGTTCCGGAAGCGGAGCTGTTGTTGGGACAGAGACAACCCCCATCAGTCCAATTCTCAATTTTCTCGTTATTTGGTTCGATTCCAAATTCTTAATCGTATTATTGCAGAATTTCATTGGTTTATCCTCTTTCAAGTGCTGTTTCAGCAATCCTCAGCGACGGCGGCATCGCGATATGTTGCTCCTTACGTAGCGGCAGCCCCGGCATTACCAAACCCTACGCTTTCAGTTGTCGCTCCCGTTTATTCAGCTCCGGTTCCAATAGCCGGTGTATATTCTCTACCGCAGTATCATCAGATGCAGACACTTACGCCTGTGGCTCTTGAGAGTGTTAAGGCAGCCATTGCAAACAGTGAGATCGAACATGGGAGGATCCTACTCTTGCAGGGTGGCCAAAAGGCAGaaggtaaaatatttttgttagtatGGCTTGCTTGTCTACATTCTTCAAACGATTATCGGCTCTTTTGTGGTGATCTTGGTAATGAGGTGAATCATGATGTTCTTTCGAAAGCATTCTCACAATTTCCTTCCTTCAATATGGCACGGAGATTTTGTTTGAAGAGCAGAGTTGTTAATGTATTATGCTTCTCAAGGATGTTAGTAGACCCACGAAGCCTTTTAAGTGGGTTTATTGGTATTTTCAAGTCTAGTCTTCAACTCGTTAACCAAGATTCGCTTTCTCGAGGAAAGATAAGTAGCGTTCTTctactttttcaaaattcaaatgaatcaaaatctGAGGCCCCAAATCAACATGCTGCTGGGGCAGACTTTTTCATTGATGATCATGTTGTCAGAGACAAGCGCACTGGAAAAACCGAGGGTTACGGATTTGTAAGCTTTCCGAATCCCTCTGATCTCGCTTCTGCTCTTAAGGAGATGAATGGTAAATATGTCGGTAATCGGCCAATTAAACTTTGCAAGAGTAAGTGGAATGAGAGGACAGATTTTGAGGCCTTAGAGAAACAGAAGAAACAAGCtcagaagaaattgaaattgtcGAGGAAGGGTGTTCTGCACAAGTG 1058 0.4112 MKKSNNGGQIKFRKRSCCWDRDNPHQSNSQFSRYLVRFQILNRIIAEFHWFILFQVLFQQSSATAASRYVAPYVAAAPALPNPTLSVVAPVYSAPVPIAGVYSLPQYHQTLTPVALESVKAAIANSEIEHGRILLLQGGQKAEGKIFLLVWLACLHSSNDYRLFCGDLGNEVNHDVLSKAFSQFPSFNMARVVRDKRTGKTEGYGFVSFPNPSDLASALKEMNGKYVGNRPIKLCKSKWNERTDFEALEKQKKQAQKKLKLSRKGVLHK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03419 269 SUPERFAMILY RNA-binding domain, RBD 158 242 IPR035979 GO:0003676
Bva04g03419 269 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 269 - -
Bva04g03419 269 CDD RRM_RBM42 159 237 IPR034215 -
Bva04g03419 269 SMART rrm1_1 162 235 IPR000504 GO:0003723
Bva04g03419 269 PANTHER RNA-BINDING PROTEIN 42-LIKE 56 269 - -
Bva04g03419 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 233 IPR000504 GO:0003723
Bva04g03419 269 Gene3D - 139 260 IPR012677 -
Bva04g03419 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 239 IPR000504 GO:0003723
Bva04g03419 269 Coils Coil 238 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03419 Bva-Chr4 27176199 27180986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g03419 163 251 Eukaryotic Initiation Factors Gene Family AT1G22760 32.967 7.99e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03419 K25079 - mnt:21407250 242.276